BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0087.p
         (186 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312547|ref|YP_003776639.1| isoleucine patch superfamily ca...   330   3e-92
gi|300311056|ref|YP_003775148.1| carbonic anhydrase/acetyltransf...    78   4e-16
gi|300313410|ref|YP_003777502.1| carbonic anhydrase/acetyltransf...    74   5e-15

>gi|300312547|ref|YP_003776639.1| isoleucine patch superfamily
           carbonic anhydrase/acetyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 186

 Score =  330 bits (847), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 162/186 (87%), Positives = 169/186 (90%)

Query: 1   MLRRNPSGDMPQVHESAYVDQTAILCGKVIVHENVFIGPYAVIRADEVNEKGEMDAIVIG 60
           MLRRNPSG  PQVHESAYVD TAILCGKVIVHENVFIGPYAVIRADEV+E GEM+ I+IG
Sbjct: 1   MLRRNPSGHRPQVHESAYVDHTAILCGKVIVHENVFIGPYAVIRADEVDEHGEMEPIIIG 60

Query: 61  AHSNIQDGVVIHSKSGGAVTIGERTSIAHRAIVHGPCTVGHDAFIGFNSVLFNCVIGDGC 120
           AHSNIQDGVVIHSKSG AVTIGERTSIAHRAIVHGPCTVG DAFIGFNSVLFNC IG GC
Sbjct: 61  AHSNIQDGVVIHSKSGAAVTIGERTSIAHRAIVHGPCTVGDDAFIGFNSVLFNCSIGAGC 120

Query: 121 VVRYNAVVDGCHLPPGFYVPSTLRIGPQTDLDALPRVSAQASEFSEDVARTNNELVQGYK 180
           VVR+NAVVDGC LPPGFYVPST RIG +TDL  +PRV+  ASEFSEDVARTNNELV GYK
Sbjct: 121 VVRHNAVVDGCDLPPGFYVPSTERIGAKTDLSTIPRVTVAASEFSEDVARTNNELVLGYK 180

Query: 181 KLQNEF 186
           KLQNEF
Sbjct: 181 KLQNEF 186


>gi|300311056|ref|YP_003775148.1| carbonic
           anhydrase/acetyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 174

 Score = 77.8 bits (190), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 90/164 (54%), Gaps = 23/164 (14%)

Query: 9   DMPQVHESAYVDQTAILCGKVIVHENVFIGPYAVIRADEVNEKGEMDAIVIGAHSNIQDG 68
           D+P++H++A+V +++ + GKV +  +  +     IR D        + I IG +SN+Q+G
Sbjct: 9   DIPEIHDTAFVAESSTVVGKVKMEAHSSVWFNVAIRGDN-------ELITIGENSNVQEG 61

Query: 69  VVIHSKSGGAVTIGERTSIAHRAIVHGPCTVGHDAFIGFNSVLFN-CVIGDGCVVRYNAV 127
            V+H+  G  + IG+  ++ H+A++HG CT+G  A IG  +V+ N   IG  C+V   A+
Sbjct: 62  AVLHTDVGYPMVIGKNVTVGHQAMLHG-CTIGEGALIGIQAVVLNGAKIGKNCLVGAGAL 120

Query: 128 V-DGCHLPPGFYVPSTLRIGPQTDLDALPRVSAQASEFSEDVAR 170
           V +G   P      ++L IG      A  +   Q SE  ED+AR
Sbjct: 121 VTEGKEFP-----DNSLIIG------APAKAVRQLSE--EDIAR 151


>gi|300313410|ref|YP_003777502.1| carbonic
           anhydrase/acetyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 200

 Score = 74.3 bits (181), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 84/173 (48%), Gaps = 23/173 (13%)

Query: 8   GDMPQVHESAYVDQTAILCGKVIVHENVFIGPYAVIRADEVNEKGEMDAIVIGAHSNIQD 67
           G +P V  SAYV  TA+L G VIV  + ++GP A +R       G+   IV+   +N+QD
Sbjct: 8   GVIPVVDPSAYVHPTAVLIGDVIVGPDCYVGPTACLR-------GDFGRIVLQRGANVQD 60

Query: 68  GVVIHSKSGGAVTIGERTSIAHRAIVHGPCTVGHDAFIGFNSVLFNCVIGDGCVVRYNAV 127
             VIH   G    + E   I H A++H  CTV  DA +G N+V+      D  VV   A+
Sbjct: 61  TCVIHGFPGHDTVVEENGHIGHGAVLHS-CTVRRDALVGMNAVVM-----DEAVVGEQAI 114

Query: 128 VDGCHLPPGFYVPSTLRIGPQTDLDALP-----RVSAQASEFSEDVARTNNEL 175
           V  C      +V + ++I P+T    LP      ++A    + +   RT  +L
Sbjct: 115 VAACA-----FVRAGMQIPPRTLAAGLPAKVVRELTADEMAWKQAGTRTYQDL 162


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.138    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 587,144
Number of extensions: 23657
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 3
Length of query: 186
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 106
Effective length of database: 1,241,070
Effective search space: 131553420
Effective search space used: 131553420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)