BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0080.p
         (200 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311182|ref|YP_003775274.1| hypothetical protein Hsero_1856...   320   4e-89

>gi|300311182|ref|YP_003775274.1| hypothetical protein Hsero_1856
           [Herbaspirillum seropedicae SmR1]
          Length = 201

 Score =  320 bits (821), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 159/197 (80%), Positives = 172/197 (87%), Gaps = 2/197 (1%)

Query: 1   MPNPNRGSCGFQSNEFEQEYDRPSKSQLKRDMTALQKLGEELVAEPRDRVKRVPMPEDVR 60
           MPN NRG+ GFQS+EFEQEYDRPSKSQLKR+M ALQKLGE LV EPRDRVKRVPMPEDVR
Sbjct: 1   MPNANRGAVGFQSSEFEQEYDRPSKSQLKREMDALQKLGESLVNEPRDRVKRVPMPEDVR 60

Query: 61  DVILECQQIKDHEGRRRQMQFVGKKMRTLEEHEIAAIQKTLDSWRGLSKADTASMHALER 120
           + ILECQQIKDHEGRRRQMQ+VGKKMRTLE  EIA IQKT+DSW G SKA+TA+MHALER
Sbjct: 61  EAILECQQIKDHEGRRRQMQYVGKKMRTLEADEIAIIQKTIDSWHGASKAETAAMHALER 120

Query: 121 RREKLLKDDNALTELLAQHPDLDAQHLRTLIRNARKEQAENKPPKAYREIFQILKQL--Q 178
           RREKLL DD ALTELL +HP++D QH+RTLIRNARKEQAENKPPKAYREIFQILKQL  Q
Sbjct: 121 RREKLLADDQALTELLNRHPEVDVQHMRTLIRNARKEQAENKPPKAYREIFQILKQLQTQ 180

Query: 179 AASRSGNAADDDADELD 195
           AA   G AA+   DE D
Sbjct: 181 AALAKGEAAEQADDEQD 197


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.130    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 520,113
Number of extensions: 18963
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,236,335
Effective search space: 147123865
Effective search space used: 147123865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 128 (53.9 bits)