BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0078.p
         (211 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311180|ref|YP_003775272.1| hypothetical protein Hsero_1854...   245   2e-66

>gi|300311180|ref|YP_003775272.1| hypothetical protein Hsero_1854
           [Herbaspirillum seropedicae SmR1]
          Length = 220

 Score =  245 bits (626), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 118/195 (60%), Positives = 139/195 (71%), Gaps = 8/195 (4%)

Query: 24  AHAAQEGSLFQPNGENLIIQPPSGWRLAYMNGDPNGDYVVEFLPQNESHDSWREGYMSVQ 83
           A A  EG LFQP GENL+I PP+GWRLAYM+GDP GDYVV+FLPQNE+HDSWREGYMSVQ
Sbjct: 25  AQAEAEGRLFQPTGENLMISPPAGWRLAYMDGDPEGDYVVDFLPQNEAHDSWREGYMSVQ 84

Query: 84  RGA---ASVSPGVH-----MSTQIVQRVLQGAQNGCSGHFTPMKQKDSMTNGAYTSISGG 135
           R     A++   +      M    +  V+Q AQ  C G F PM QKDS+TN   TS+SGG
Sbjct: 85  RRTFPEAALRDNIRARNLTMPQVAISEVMQIAQRKCPGRFVPMGQKDSLTNNIPTSVSGG 144

Query: 136 FCDRYGPAAPFGEGSLVAVIEGTKNLFLVQFGWRPSTPNELNGYPLRITPQRLQVLLDQL 195
           FCDR GP+AP+GEGS++AV EG + LF+VQF WRPST NEL  +  RI+P RLQ  LD L
Sbjct: 145 FCDRLGPSAPYGEGSVMAVFEGKERLFVVQFSWRPSTENELKQFAYRISPARLQQFLDLL 204

Query: 196 NRAMLCGGADQLTCP 210
           N A LCGG D+  CP
Sbjct: 205 NAATLCGGPDEGKCP 219


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 653,451
Number of extensions: 26654
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 130
Effective length of database: 1,236,335
Effective search space: 160723550
Effective search space used: 160723550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)