BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0076.p (423 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309529|ref|YP_003773621.1| TonB dependent ferrisiderophore... 553 e-158 gi|300312681|ref|YP_003776773.1| TonB-dependent siderophore rece... 181 7e-47 gi|300312551|ref|YP_003776643.1| ferrisiderophore receptor prote... 143 2e-35 gi|300310859|ref|YP_003774951.1| TonB-dependent siderophore rece... 143 2e-35 gi|300310762|ref|YP_003774854.1| outer membrane ferric sideropho... 142 4e-35 >gi|300309529|ref|YP_003773621.1| TonB dependent ferrisiderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 704 Score = 553 bits (1424), Expect = e-158, Method: Compositional matrix adjust. Identities = 278/427 (65%), Positives = 328/427 (76%), Gaps = 19/427 (4%) Query: 1 LTHRFNDSLSLRNAFRYYDYHLNRNNTNISGNVNEVARTMQFGHAALSRDENGWFNQTEL 60 THRFND S RN RYYDYHLNRNNTN G VNE T HA L RDENGWFNQ+EL Sbjct: 293 FTHRFNDEFSFRNGLRYYDYHLNRNNTN-GGTVNEATATTTLNHAKLVRDENGWFNQSEL 351 Query: 61 TQKLTIAGTKHEILYGVEVGQQSKDSMSSSGPTSGP-TSIFNPVLPTIVASAVTVNNRTF 119 TQKL + +HEILYG+E+G QSKD+ +SG + P SIFNPVLP + + + T+ Sbjct: 352 TQKLQLGSIRHEILYGLELGSQSKDASQASGVVNFPGVSIFNPVLPVVDPNRLNPPTLTY 411 Query: 120 GTYDTLAGYVQDTIAFSDQWKALLGVRYDSFKQQSRVVTT---STANLSRTDNAFSPRAG 176 GTYDT A Y+QD+++ S+QWKAL+G+RYD ++QQSR++ STA+L RTD A SPRAG Sbjct: 412 GTYDTFATYLQDSLSLSEQWKALVGLRYDRYRQQSRILNLANGSTADLQRTDTAVSPRAG 471 Query: 177 LVWQPSETQSYYLSWSRSFQPSGETLPLATTNADIAPENTRNTEVGAKYDFLDGRVSTTV 236 LVWQPS TQSYYLSWSRSFQPSGE+ LAT NAD+APE TRNTE GAKYDF +GR S TV Sbjct: 472 LVWQPSLTQSYYLSWSRSFQPSGESFALATNNADLAPEQTRNTEAGAKYDFWEGRASATV 531 Query: 237 SVFRLERDNIKASDPITRVIIPVGKQRTDGVELTLSADLKQGWKVLTGYAYLDAKVTDSI 296 SVFRLERDNIK++ P V+IPVGKQRTDG EL+ SADLKQGWK+L GYA+L+A +T+S Sbjct: 532 SVFRLERDNIKSALP-NGVVIPVGKQRTDGAELSFSADLKQGWKLLAGYAWLNAVITESS 590 Query: 297 AVDGSTNVAGINPPVANNVPIKGKRATLTAMHSANLWLTKDVGNGFTLGGGANAVGSRFA 356 + D N VP KGK ATLT HS NLWLT+++G G +GGGANAVG+RFA Sbjct: 591 SFD-------------NGVPFKGKNATLTPRHSGNLWLTRELGEGLVVGGGANAVGARFA 637 Query: 357 NPGNTVSLPGYFTADAMAVYKAAKYSVQLNINNIFNTGYIVSGHGSSPNLSLPGAPRNVA 416 NPGNTV+LPGY T DAMA Y+ +KY VQLNI N+FNTGYI+SGHG++PNLS+PGAPRNVA Sbjct: 638 NPGNTVTLPGYVTVDAMAAYRTSKYEVQLNIGNLFNTGYIISGHGTNPNLSMPGAPRNVA 697 Query: 417 LTLRYSM 423 LTLRY M Sbjct: 698 LTLRYHM 704 >gi|300312681|ref|YP_003776773.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 738 Score = 181 bits (460), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 125/389 (32%), Positives = 188/389 (48%), Gaps = 38/389 (9%) Query: 55 FNQTELTQKLTIAGTKHEILYGVEVGQQSKD-------------SMSSSGPTSG---PTS 98 FNQTELT K KH+ + GVEVG D +++++G T+G Sbjct: 368 FNQTELTAKFATGSIKHDAVVGVEVGHDGYDNQNYYRNGSCNGTALNANGATTGYVDCVP 427 Query: 99 IFNPVLPTIVASAVT-VNNRTFGTYDTLAGYVQDTIAFSDQWKALLGVRYDSFKQQ---S 154 + NP +S + NR G+ +T+A YV DT+ Q+K + G+RYD + S Sbjct: 428 LLNPSYSAAGSSVSSSTGNRAGGSANTVAAYVGDTVELVPQFKLVGGLRYDRYIASITNS 487 Query: 155 RVVTTSTANLSRTDNAFSPRAGLVWQPSETQSYYLSWSRSFQPSGETLPLATTNADIAPE 214 + A S+T N S R+G +WQP+ Q+YY+S+ SF PS E L ++ PE Sbjct: 488 IASARTPAAASQTINFLSLRSGAIWQPTSAQAYYVSYGTSFNPSLEQLTGTQGQQNLDPE 547 Query: 215 NTRNTEVGAKYDFLDGRVSTTVSVFRLERDNIKASDPITRVIIPVGKQRTDGVELTLSAD 274 R+ E+G K+D DG ++ T + F++ +DN + S T V GK R +G + Sbjct: 548 KNRSYELGGKWDLADG-LALTAAAFQITKDNAR-SQVATGVYALAGKVRVNGARAGATGH 605 Query: 275 LKQGWKVLTGYAYLDAKVTDSIAVDGSTNVAGINPPVANNVPIKGKRATLTAMHSANLWL 334 + + W+V Y YL AKV + A D S +N P H+ W Sbjct: 606 ITREWQVAANYTYLGAKVLEGAAGDNSVGKVPVNTP----------------KHTLTTWT 649 Query: 335 TKDVGNGFTLGGGANAVGSRFANPGNTVSLPGYFTADAMAVYKAAKYSVQLNINNIFNTG 394 T D+ + +GGGA+ + R+A+ NTV + GY DAM Y Y ++LN+ N+ N Sbjct: 650 TYDLAPHWQIGGGASYMSQRYADAPNTVQVGGYTRYDAMLAYTTKAYDIRLNLYNLSNKM 709 Query: 395 YIVSGHGSSPNLSLPGAPRNVALTLRYSM 423 Y + S S+PG+ R L+L Y M Sbjct: 710 YYDALIQSDGGRSVPGSGRTALLSLTYRM 738 >gi|300312551|ref|YP_003776643.1| ferrisiderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 755 Score = 143 bits (361), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 119/450 (26%), Positives = 209/450 (46%), Gaps = 49/450 (10%) Query: 1 LTHRFNDSLSLRNAFRY----YDYHL----------NRNNTNISGNVNEVARTMQFGHAA 46 + H F+ L L+N RY DY L +R++ ++ E T + Sbjct: 318 VEHDFSPDLKLQNTTRYARTDQDYRLSSFVAIGVKTDRSSVSLFTPSPEDRSTWEVSRNI 377 Query: 47 LSRDENG---WFNQTELTQKLTIAGTKHEILYGVEVGQQSKDSMSSSGPTSGPTSIFNPV 103 ++R + NQT LT +H ++ G+E+ ++ + ++S +GP+ P + Sbjct: 378 ITRRDQSNEILSNQTHLTASFQSGALQHTLVGGLELTRERQHALSFTGPSRRPRANLYQP 437 Query: 104 LPTIVASA--VTVNNRTFGTYDTLAGYVQDTIAFSDQWKALLGVRYDSFKQQ-SRVVTTS 160 P S ++VN R G DT++ Y DT+ F+++W LG+R D ++ + Sbjct: 438 NPEFDDSGTLISVNGRNKGQTDTVSLYALDTLKFNERWSLSLGLREDFYRTSFDDTKPNA 497 Query: 161 TANLSRTDNAFSPRAGLVWQPSETQSYYLSWSRSFQPSGET---LPLATTNA---DIAPE 214 L ++ F+ + +V++P+ S Y ++ + QP G L + +NA D AP+ Sbjct: 498 GGPLHKSGGLFNAKVAVVFKPTSYSSLYALYASAQQPPGGANFNLSASRSNASHTDYAPQ 557 Query: 215 NTRNTEVGAKYDFLDGRVSTTVSVFRLERDNIKASDPITRVIIPVGKQRTDGVELTLSAD 274 T E+G K++ LD ++ T +++R E +N D +T GK+ T G+EL ++ D Sbjct: 558 KTDTGEIGTKWELLDRKLIATAALYRTEVNNEVELDSLTNTYFQTGKKITQGLELGVTGD 617 Query: 275 LKQGWKVLTGYAYLDAKVTDSIAVDGSTNVAGINPPVANNVPIKGKRATLTAMHSANLWL 334 L + GY+++ ++V+ V + N R + T+ W+ Sbjct: 618 LSPTVSLTAGYSHMQSQVSRGALVSAT----------GENFLAYAPRRSFTS------WV 661 Query: 335 TKDVGNGFTLGGGANAVGSRF-ANPGNTVSLP----GYFTADAMAVYKAAKYS-VQLNIN 388 + + GFTLGGG G N + P Y+ AD MA Y +++ +QLN+N Sbjct: 662 SWRLPQGFTLGGGLRYSGGLLRGRDTNAIGTPKDTGAYWVADVMASYVIHQHAEIQLNVN 721 Query: 389 NIFNTGYIVSGHGSSPNLSLPGAPRNVALT 418 N+FN Y+ S + S LPG RN++LT Sbjct: 722 NLFNNSYVRSINKSGYRY-LPGDARNISLT 750 >gi|300310859|ref|YP_003774951.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 705 Score = 143 bits (361), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 128/437 (29%), Positives = 202/437 (46%), Gaps = 52/437 (11%) Query: 1 LTHRFNDSLSLRNAFRYYDYHLNRNNTNISGNVNEVARTMQFGHAALSRDEN----GWFN 56 L R N++ LR + + L+ +T A +Q +A L R W + Sbjct: 299 LEQRLNENWHLRTGIFHKEGSLDGYSTE--------AFALQADNATLRRQRRYRDYSWHD 350 Query: 57 ---QTELTQKLTIAGTKHEILYGVEVGQQSKDS----MSSSGPTSGPTSIFNPVLPTIVA 109 Q E+ K AG HE+L G EV + D ++ S +I+NPV Sbjct: 351 TSLQAEIGGKFATAGVGHEVLVGTEVDWLTLDQRMLRINPSNVAPYAVNIYNPVYGQAQP 410 Query: 110 SAVTVNNRTFGTYDTLAGYVQDTIAFSDQWKALLGVRYDSFKQQSRVVTTSTANLSRTD- 168 + T N T + Y+QD ++ S++W+ L GVR D+F+ S + ++R D Sbjct: 411 TP-TANTDTSERQISTGLYLQDQLSLSERWRLLAGVRADAFR--STLNNLRNGAVTRQDK 467 Query: 169 NAFSPRAGLVWQPSETQSYYLSWSRSFQP-SGETLPLATTNADIAPENTRNTEVGAKYDF 227 +A+SPR GL + + + S Y+S S+SF+P SG + + NA +PE +R E G K+ Sbjct: 468 HAYSPRLGLTYLLTPSWSVYVSASKSFRPNSGSDV---SGNA-FSPETSRAAEAGLKFQS 523 Query: 228 LDGRVSTTVSVFRLERDNIKASDPIT-RVIIPVGKQRTDGVELTLSADLKQGWKVLTGYA 286 D R T++VF + + N+ +DP I G+ R+ GVEL +A L W+V A Sbjct: 524 EDKRSGATLAVFDITKQNVLTTDPANPNFSIAAGEVRSKGVELDANARLGHHWRVTGNLA 583 Query: 287 YLDAKVTDSIAVDGSTNVAGINPPVANNVPIKGKRATLTAMHSANLWLTKDV---GNGFT 343 Y DA V+ N +P+ + + ++ L + +D G + Sbjct: 584 YTDAYVSRD-----------------NTLPVGSRLVNIPRSSASLLAVFEDADAHGAPYG 626 Query: 344 LGGGANAVGSRFANPGNTVSLPGYFTADAMAVYK-AAKYSVQLNINNIFNTGYIVSGHGS 402 +GGG N VG R + + LP Y TA A+A ++ K + L++NN+FN Y S + S Sbjct: 627 VGGGLNYVGRRTGDQAGSFMLPSYVTARALAYWQFTPKMKLSLDVNNLFNKRYYSSSYNS 686 Query: 403 SPNLSLPGAPRNVALTL 419 +PG RN L L Sbjct: 687 L--WIMPGDERNATLAL 701 >gi|300310762|ref|YP_003774854.1| outer membrane ferric siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 717 Score = 142 bits (358), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 125/443 (28%), Positives = 190/443 (42%), Gaps = 57/443 (12%) Query: 1 LTHRFNDSLSLRNAFRYYDYHLNRNNTNISGNVNEVARTMQFGHAALSRDENGWFNQTEL 60 LT + +LR+A D + N +NT ++ + +R + Q + Sbjct: 312 LTRALSQDWTLRHALALMDLNSNFDNTFVTQAYQSA--PLDLDRVQRTRYQQN-LQQRSV 368 Query: 61 TQKLTIAGT--KHEILYGVEVGQQSKDSMSSSGPTSGPTSIFNPVLPTIVASAVTVNNRT 118 L + G H++L GVE Q ++ +++ P + SAVT N Sbjct: 369 QNNLELLGQLGAHDLLLGVEHSWQKREP-----------RLWSVAAPAV--SAVTPENTR 415 Query: 119 FGTYDT------------LAGYVQDTIAFSDQWKALLGVRYDSFKQQSRVVTTSTANLSR 166 G T L YVQD I + WK L G+R+D F+ SR + R Sbjct: 416 NGDDPTTPFQMNYHKASNLGLYVQDKITLAAHWKMLAGLRWDRFEVDSRNRRNGVRS-ER 474 Query: 167 TDNAFSPRAGLVWQPSETQSYYLSWSRSFQPSGETLPLATTNA-----DIAPENTRNTEV 221 T +A SPR G+VW+ Q YLSWS++F P G + T +A D+ P+ +R E Sbjct: 475 TAHALSPRIGVVWEALPGQHAYLSWSKNFAPVGGDVIGITPDARGNFNDLKPQFSRQVEA 534 Query: 222 GAKYDFLDGRVSTTVSVFRLERDNIKASDPITRVIIP-VGKQRTDGVELTLSADLKQGWK 280 G K ++LD R+STT++ F+LE N +DP+ G +R G+EL++ +L W Sbjct: 535 GIKSEWLDRRLSTTLAWFQLELFNRNVADPVRPGFFEQSGLERNRGIELSVEGELAAPWF 594 Query: 281 VLTGYAYLDAKVTDSIAVDGSTNVAGINPPVANNVPIKGKRATLTAMHSANLWLTKDVGN 340 V G+A AK+ V GKRA+ + +L+L+ Sbjct: 595 VRAGWAIQSAKI------------------VQAEPKFVGKRASGVSGRGGSLFLSYAPTL 636 Query: 341 GFTLGGGANAVGSRFANPGNTVSLPGYFTADAMAVYKAAKYSVQLNINNIFNTGYIVSGH 400 G+ G G+R+A+ N + LP Y D Y+ + L + N+ N Y S Sbjct: 637 GWFAELGLTVEGARYADRDNLLELPAYTRWDGKMGYRLDEAEFTLAVTNLANRRYYESAT 696 Query: 401 GSSPNLSLPGAPRNVALTLRYSM 423 G S PGAPR + LT Y Sbjct: 697 GLSQ--VRPGAPRALLLTAAYKF 717 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.129 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,293,261 Number of extensions: 51721 Number of successful extensions: 194 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 139 Number of HSP's successfully gapped: 21 Length of query: 423 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 335 Effective length of database: 1,203,190 Effective search space: 403068650 Effective search space used: 403068650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 132 (55.5 bits)