BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0075.p (370 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309529|ref|YP_003773621.1| TonB dependent ferrisiderophore... 417 e-118 gi|300310762|ref|YP_003774854.1| outer membrane ferric sideropho... 129 3e-31 gi|300312681|ref|YP_003776773.1| TonB-dependent siderophore rece... 125 4e-30 gi|300312551|ref|YP_003776643.1| ferrisiderophore receptor prote... 117 1e-27 gi|300310859|ref|YP_003774951.1| TonB-dependent siderophore rece... 112 3e-26 >gi|300309529|ref|YP_003773621.1| TonB dependent ferrisiderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 704 Score = 417 bits (1072), Expect = e-118, Method: Compositional matrix adjust. Identities = 210/287 (73%), Positives = 244/287 (85%), Gaps = 12/287 (4%) Query: 1 MEFRIKPGYLAVLATLSLTSINTAWA---QSAGSLPEVQVSGAR--EGYVAPTSVSATKS 55 M FR+ P LAVLAT SL+ + A Q +LP ++VSGAR +GYVAPT+VS TKS Sbjct: 1 MNFRLSPLRLAVLATCSLSPLAILPACAQQDTTALPAIEVSGARANDGYVAPTAVSGTKS 60 Query: 56 EAPLRDIPQTINVISAEVIRDQHATSLQDILKNVPGVGLSTGDGQRDQVFIRGFTAIGDQ 115 EAPLRD+PQTINV+ A+VIRDQ+A+SLQD+LKNVPG+GLSTGDGQRDQVFIRGFTAIGDQ Sbjct: 61 EAPLRDVPQTINVVPAQVIRDQNASSLQDVLKNVPGLGLSTGDGQRDQVFIRGFTAIGDQ 120 Query: 116 FVDGFRDDALYFRDLSNVERLEVIKGPAAVLYGRGSSGGLINRVTKKPGVDISDVSVSFT 175 FVDGFRDDALYFRDLSNVE +EVIKGPAAVLYGRGSSGGLINRVTKKPGVD+SDVS + Sbjct: 121 FVDGFRDDALYFRDLSNVESVEVIKGPAAVLYGRGSSGGLINRVTKKPGVDVSDVSFTAN 180 Query: 176 STAGRRGXELLRGEIDVGRSGE-TVSWRLTGAREQSDSYRAQQFLDRTAISPSVEVKFTS 234 STAGR R E+D+GR+GE +SWRLTGA E+ DS+RAQQF+DRTAI+PSV ++F++ Sbjct: 181 STAGR------RAELDLGRAGEGALSWRLTGAVERGDSFRAQQFIDRTAIAPSVALRFSA 234 Query: 235 DTRLLLQADYIEDRRLTDFGIPSYQGRPVSVDPGKYYGAANARDADF 281 DT+LLLQ DY+EDRR+ DFGIPSY+GRPV VDPG YGA NARDADF Sbjct: 235 DTKLLLQMDYLEDRRMMDFGIPSYRGRPVDVDPGTTYGARNARDADF 281 >gi|300310762|ref|YP_003774854.1| outer membrane ferric siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 717 Score = 129 bits (325), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 83/220 (37%), Positives = 125/220 (56%), Gaps = 11/220 (5%) Query: 51 SATKSEAPLRDIPQTINVISAEVIRDQHATSLQDILKNVPGVGLSTGDGQRDQVFIRGFT 110 +AT+S A ++PQ+I +S E + A +L L VPG+ S D + D IRGF+ Sbjct: 69 TATRSAADPMEVPQSIQSVSVEQVSVYGARTLAGALLGVPGIS-SISDTRFDAFRIRGFS 127 Query: 111 AIGDQFVDGFRDDALYFRDLSNVERLEVIKGPAAVLYGRGSSGGLINRVTKKPGVDISDV 170 + D +DG RDD Y R L N+ER+EV++GPA+VLYGRGS GG+INR++K+PG D++ Sbjct: 128 SANDLLLDGMRDDPQYVRGLGNIERVEVLRGPASVLYGRGSGGGVINRISKQPGQDVASQ 187 Query: 171 SVSFTSTAGRRGXELLRGEIDVGRS-GETVSWRLTGAREQSDSYRAQQFLDRTAISPSVE 229 + +AG LL +D R + R+ RE + S+R R +P+++ Sbjct: 188 ATLSLGSAG-----LLGAALDWNRPLAPHWALRINTGREHAGSFRDTVNGTRQYFAPALK 242 Query: 230 VKFTSDTRLLLQADYIEDRRLTDFGIPSYQGRPVSVDPGK 269 + D+ LLQA+Y E R+ D GIP GR ++ G+ Sbjct: 243 WESGRDS-WLLQAEYDEYERVPDRGIP---GRAIATANGE 278 >gi|300312681|ref|YP_003776773.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 738 Score = 125 bits (315), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 86/265 (32%), Positives = 144/265 (54%), Gaps = 16/265 (6%) Query: 30 GSLPEVQVSGAREGYVAPTSVSATKSEAPLRDIPQTINVISAEVIRDQHATSLQDILKNV 89 G L V V G R+ + A T + TK A LRD+PQ++ V++ ++ Q A+SL D L+NV Sbjct: 40 GQLAPVTVQGQRDDF-ASTGTALTKLPADLRDVPQSVTVVNKAQMQSQGASSLSDALRNV 98 Query: 90 PGVGLSTGDGQR--DQVFIRGFTAIGDQFVDGFRDDALYFRDLSNVERLEVIKGPAAVLY 147 G+ L +G + + + + GF+A D ++DGFRD Y+RD ++ +EV+ GP+++L+ Sbjct: 99 SGITLGGAEGGQIGNNINLNGFSARTDIYLDGFRDRGQYYRDTFAIDEVEVLMGPSSMLF 158 Query: 148 GRGSSGGLINRVTKKPGVD-ISDVSVSFTSTAGRRGXELLRGEIDVGRS-GETVSWRLTG 205 GRGS+GG+IN+V+KK + +++S S T+ L+R +DV R +T + R+ Sbjct: 159 GRGSTGGIINQVSKKANLKAATEISGSITTNG------LVRSTVDVNRPLSDTSALRIEA 212 Query: 206 -AREQSDSYRAQQFLDRTAISPSVEVKFTSDTRLLLQADYIEDRRLTDFGIPSYQGRPVS 264 A+ + S R Q + ++ S + T + L A ++ D+G+P G P + Sbjct: 213 MAQNGAASTRKQTDVQDFGLAGSYVWGIGTPTEITLSALLQHNQDQPDYGLPPLNGHPAN 272 Query: 265 VDPGKYYGAANARD----ADFAAGI 285 V YG + R A F G+ Sbjct: 273 VGRDTAYGLNSDRTIQDVASFNVGV 297 >gi|300312551|ref|YP_003776643.1| ferrisiderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 755 Score = 117 bits (293), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 96/285 (33%), Positives = 141/285 (49%), Gaps = 29/285 (10%) Query: 7 PGYLAVLATLSLTS-----INTAWAQSAGS-LPEVQVSGAREGYVAPTSVSATKSEAPLR 60 P + A L +L++ S + A AQ++GS LP +V GARE ++ K PL Sbjct: 12 PAHAARLPSLAVASALLLPVMGAHAQTSGSGLPPTRVDGARESPYKSEYSASPKYTQPLV 71 Query: 61 DIPQTINVISAEVIRDQHATSLQDILKNVPGVGL-------STGDGQRDQVFIRGFTAIG 113 D PQT+ ++ ++ Q ATSL D+L+N PGVG ST G D +++RGF A G Sbjct: 72 DTPQTLQILRRPLMAQQAATSLSDVLRNTPGVGAFFLGENGSTSTG--DTIYMRGFDATG 129 Query: 114 DQFVDGFRDDALYFRDLSNVERLEVIKGPAAVLYGRGSSGGLINRVTKKPG-VDISDVSV 172 FVD RD RD+ N+E++EV+KG A GRGS G IN VTK+P VD VS Sbjct: 130 VIFVDNVRDLGAISRDVFNIEQVEVLKGQAGTDNGRGSPTGSINLVTKQPELVDAVTVSA 189 Query: 173 SFTSTAGRRGXELLRGEIDVGRSGETVSWRLTGAREQSD-SYRAQQFLDRTAISPSVEVK 231 ++ S +R +D R ++ RL ++ S R R +PS+ Sbjct: 190 TYGSWIQKRATLDWNRILDADRG---LALRLNLMKQHSGVPGRHVVHNARDGFAPSLAFG 246 Query: 232 FTSDTRLL-----LQADYIEDRRLTDFGIPSYQGRPVSVDPGKYY 271 + TR+ +Q D + D ++ G+P Y + DP + Y Sbjct: 247 LNTPTRIFFNYLHIQQDNVPDGGVSTIGLPGYS----TPDPNRPY 287 >gi|300310859|ref|YP_003774951.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 705 Score = 112 bits (281), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 92/287 (32%), Positives = 141/287 (49%), Gaps = 27/287 (9%) Query: 11 AVLATLSL-TSINTAWAQSA-----GSLPEVQVSG--AREGYVAPTSVSATKSEAPLRDI 62 AVL L+L + + +WA A G L E+ V+G R+ Y ++ SAT++E PL+++ Sbjct: 9 AVLGALALGQTPSVSWAADAAGKQEGDLGEIVVTGQGERQQYRQSSTSSATRTETPLQEL 68 Query: 63 PQTINVISAEVIRDQHATSLQDILKNVPGVGLSTG-DGQRDQVFIRGFTAIGDQ----FV 117 PQ++ V+S ++I D AT L D+L V GV G D IRGF+ + Sbjct: 69 PQSVQVVSRQLIDDLAATRLDDVLLYVSGVARQNNFGGLWDNYSIRGFSGSENGGMNILW 128 Query: 118 DGFRDDALYF--RDLSNVERLEVIKGPAAVLYGRGSSGGLINRVTKKP---GVDISDVSV 172 +GF + Y RD++NVE ++ +KGPAA LYG GG IN VTKKP + D+S+ Sbjct: 129 NGFASNRGYAPPRDMANVESVDFLKGPAAALYGNSEPGGTINVVTKKPQFKSANALDLSI 188 Query: 173 SFTSTAGRRGXELLRGEID-VGRSGETVSWRLTGAREQSDSYRAQQFLDRTAISPSVEVK 231 + R +D G TV++RL A E S R Q +R +P+ Sbjct: 189 G--------SNDAYRSAVDSTGALSSTVAYRLNAAMEHKGSMRDQVRSEREFFAPAFTWL 240 Query: 232 FTSDTRLLLQADYIEDRRLTDFGIPSYQGRPVSVDPGKYYGAANARD 278 T +T L + +++ + D GI + G + ++ G N D Sbjct: 241 LTENTILNYEGEFLRQKAPLDRGIVAVNGNAGVLPVSRFLGEPNDGD 287 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,157,761 Number of extensions: 48891 Number of successful extensions: 208 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 181 Number of HSP's successfully gapped: 17 Length of query: 370 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 283 Effective length of database: 1,207,925 Effective search space: 341842775 Effective search space used: 341842775 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)