BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0070.p
         (159 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312661|ref|YP_003776753.1| competence- and mitomycin-induc...   276   7e-76
gi|300311621|ref|YP_003775713.1| competence- and mitomycin-induc...   133   7e-33

>gi|300312661|ref|YP_003776753.1| competence- and mitomycin-induced
           protein [Herbaspirillum seropedicae SmR1]
          Length = 160

 Score =  276 bits (705), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 132/158 (83%), Positives = 146/158 (92%)

Query: 1   MDTSTDLAARVGLALKARNLLLSTAESCTGGGVAQAITEIAGSSEWFDCGFITYSNASKN 60
           MD++ DLA RVG  LKA+ LLL+TAESCTGGG+A AITEIAGSSEWFDCGF+TYSNASKN
Sbjct: 1   MDSTLDLATRVGQTLKAKGLLLATAESCTGGGIAHAITEIAGSSEWFDCGFVTYSNASKN 60

Query: 61  ELLEISEALIAQHGAVSEEIAAAMAEGAIANSSSDVAVSTTGIAGPGGAVPGKPVGTVCF 120
           ELL+ISEALIAQHGAVSEEIA AMAEGA+ANSSSDVAVSTTGIAGPGGAVPGKPVGTVCF
Sbjct: 61  ELLDISEALIAQHGAVSEEIAGAMAEGAVANSSSDVAVSTTGIAGPGGAVPGKPVGTVCF 120

Query: 121 GWKVGDQTFTERLVFSGDRRAVREQAVVHSLQGLLRLL 158
           GW+VGD+T+TERLVF GDR+ VR Q V HSL+GLL+LL
Sbjct: 121 GWRVGDKTYTERLVFKGDRQQVRAQTVEHSLKGLLKLL 158


>gi|300311621|ref|YP_003775713.1| competence- and mitomycin-induced
           protein [Herbaspirillum seropedicae SmR1]
          Length = 165

 Score =  133 bits (334), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 69/154 (44%), Positives = 98/154 (63%), Gaps = 4/154 (2%)

Query: 9   ARVGLALKARNLLLSTAESCTGGGVAQAITEIAGSSEWFDCGFITYSNASKNELLEISEA 68
           AR+G  L  +++ L TAESCT G VA A+ ++ G  +W +  F+TY+  +K  +L ++ A
Sbjct: 6   ARLGQLLCQQDMRLVTAESCTAGMVAAALGDVEGCGQWLEGAFVTYTEQAKEVMLRVARA 65

Query: 69  LIAQHGAVSEEIAAAMAEGAIANSSSDVAVSTTGIAGPGGAVPGKPVGTVCFGWKV---- 124
            + ++G  SEEIA  MA+GA+  S++ VA++ TG+AGP  A  G P GTVCF W +    
Sbjct: 66  DMQRYGLTSEEIAERMAQGALEGSAARVAIANTGVAGPDDAPDGTPAGTVCFAWIIHHPQ 125

Query: 125 GDQTFTERLVFSGDRRAVREQAVVHSLQGLLRLL 158
           G    T R  F+GDR+AVREQA  HS+   LRLL
Sbjct: 126 GKTLRTARRQFAGDRQAVREQAAQHSILQTLRLL 159


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.129    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 339,238
Number of extensions: 9136
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 2
Length of query: 159
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,250,540
Effective search space: 101293740
Effective search space used: 101293740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)