BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0065.p
         (166 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312665|ref|YP_003776757.1| membrane protein [Herbaspirillu...   176   1e-45

>gi|300312665|ref|YP_003776757.1| membrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 177

 Score =  176 bits (446), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 92/165 (55%), Positives = 116/165 (70%), Gaps = 4/165 (2%)

Query: 6   RFLRHLRHTRASARASFPPATLQAIQTCIGAGEAKHRAEVRLVIEAALPLGAVLRNESSR 65
           R L HLR TRA+AR +FP  TL+AIQ  IGAGE +HRA+VR+++EAAL LGAV R +S+R
Sbjct: 13  RLLHHLRMTRAAARRAFPSTTLKAIQASIGAGEREHRAQVRVIVEAALSLGAVRRGDSAR 72

Query: 66  ARAHELFSHYRIWDTEENSGVLIYLNLADHRVEIVTDRTVGRVLKRADWESVCSTMTRSF 125
            RAHELFSHYRIWDTEEN GVL+Y+NLAD +VEIV DR V   + R  W+ VC  MT  +
Sbjct: 73  QRAHELFSHYRIWDTEENCGVLVYINLADRKVEIVADRGVNARVTREQWQQVCRAMTAGY 132

Query: 126 ANGIYHDGVLEALAQLNGLLTVHFPQ----TSHQKNEISNRPLML 166
           A G Y    L+ALA L+ +L    P+         NE+S++PL+L
Sbjct: 133 AQGEYEASTLQALASLHEILRKVLPREPDAAGDMHNELSDKPLLL 177


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 481,008
Number of extensions: 17359
Number of successful extensions: 42
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 88
Effective length of database: 1,250,540
Effective search space: 110047520
Effective search space used: 110047520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)