BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0063.p
         (470 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312666|ref|YP_003776758.1| D-alanyl-D-alanine carboxipepti...   612   e-176

>gi|300312666|ref|YP_003776758.1| D-alanyl-D-alanine
           carboxipeptidase 3 (S13) family signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 484

 Score =  612 bits (1577), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 295/452 (65%), Positives = 354/452 (78%), Gaps = 9/452 (1%)

Query: 27  AAQELPPAVTGALKQAKIPARNVGVFVQAVDAT-RPMLAFNATAPFNPASVMKLVTTDAA 85
           AAQ LPPAV GAL+ A IP +N GV V   + + R +++ N   PFNPASVMKLVTTDAA
Sbjct: 34  AAQSLPPAVVGALRVAHIPQQNTGVLVIDTEGSKRVLVSNNIGQPFNPASVMKLVTTDAA 93

Query: 86  LELLGPAFNWKTQAYIDGVLNDGVLLGDLSIKGSGDPKLVMENFWMFLRQIRAKGIRDIR 145
           LE+LGP F WKTQAYIDG L+ GVL GDL +KG GDPKLV+ENFW+ LRQ+RA+GI+DIR
Sbjct: 94  LEMLGPTFTWKTQAYIDGTLSGGVLNGDLILKGGGDPKLVLENFWLLLRQLRARGIQDIR 153

Query: 146 GNVVLDRSVFEENVYDPAQFDGDPQKPYNVGPDALLLNYKTVAIRFMPDEASGQVSVAME 205
           GN+VLDRS F  + YDPAQFDGDPQKPYN GPDALLLNY+T A RF PD ASG VSV+M+
Sbjct: 154 GNLVLDRSYFAPSSYDPAQFDGDPQKPYNAGPDALLLNYRTQAFRFEPDAASGTVSVSMD 213

Query: 206 PPLSGYTVAAPRMSKEAVCGDWQGKLQADVGVGAAVFNGAFPAVCGEKVWYIHPYRMSAT 265
           PP++G+T+  PR+S+E  CGDWQGKL  +     A F+G++ A CG +VWY+HPYRMS  
Sbjct: 214 PPMAGFTITPPRLSQEP-CGDWQGKLMLNNDASGATFSGSYSADCGARVWYVHPYRMSNV 272

Query: 266 QYFGAVLRQMWSELGGTISGKVMPGNVAPVARLLAEWQSPAVPEVIRDINKYSNNVMARQ 325
           QY GA   QMW++LGG  +G+V+ G V P AR++ E QSPA+PEVIRDINKYSNNVMARQ
Sbjct: 273 QYVGASFAQMWADLGGRFAGRVLDGQVTPSARMMVEVQSPALPEVIRDINKYSNNVMARQ 332

Query: 326 LLLTIGAQASQSPGSTARGAQAIRGWXDE-------LVIENGAGLSRNERIAPNTLGQVL 378
           +LLT+GA+ +  PG     A+A+RGW  +       L IENGAGLSR ER+ P  L  VL
Sbjct: 333 VLLTLGAEMTGQPGDPVNAARAVRGWLGDKGIDTNGLAIENGAGLSRIERVTPGLLANVL 392

Query: 379 VTAFHSPVMPEFIASMPLVGYDGTMRKRLRGENVAGQAHIKTGSLNDVRSIAGYVQAASG 438
           + A+ SP+MPEF++S+PLVGYDGTMR+RL+ + VAGQAHIKTG+LNDVRSIAGYVQAASG
Sbjct: 393 LQAWRSPLMPEFVSSLPLVGYDGTMRRRLKTQGVAGQAHIKTGTLNDVRSIAGYVQAASG 452

Query: 439 KMYVVVCLINHPNAPFGQAAQDALLQWVFEKG 470
           K YVVV LINHP AP GQ AQDALLQWV+E G
Sbjct: 453 KTYVVVFLINHPAAPNGQKAQDALLQWVYENG 484


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,455,219
Number of extensions: 60941
Number of successful extensions: 157
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 381
Effective length of database: 1,198,455
Effective search space: 456611355
Effective search space used: 456611355
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)