BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0060.p
         (297 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312669|ref|YP_003776761.1| Mg(2+) transport ATPase [Herbas...   426   e-120
gi|300311691|ref|YP_003775783.1| cation transport ATPase [Herbas...    57   1e-09

>gi|300312669|ref|YP_003776761.1| Mg(2+) transport ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 920

 Score =  426 bits (1095), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 200/244 (81%), Positives = 227/244 (93%)

Query: 18  MNLDLLKETFANFVRARGMDRHFHRLGVDMFRSSPTTKEVPQTVAQNLVGASRTELSELL 77
           MNL+LLKETF +F+RARGMDRHF RLG+DMFRS+P TKEVPQT+A+ L  ASR+ + +LL
Sbjct: 1   MNLNLLKETFVSFIRARGMDRHFRRLGMDMFRSAPVTKEVPQTLAEQLSDASRSHVQDLL 60

Query: 78  KKLHTRTDGLTEQEADAIRAEVGPNEVEHEKPLSWWVHLWHCYKNPFNLLLTVLAAVSYY 137
           ++LH+R DGLTE EADAIRA  GPNEVEHEKPL+W+VHLWHCYKNPFNLLLT+LAAVS+Y
Sbjct: 61  QRLHSRPDGLTESEADAIRAHSGPNEVEHEKPLTWYVHLWHCYKNPFNLLLTLLAAVSFY 120

Query: 138 TEDMKAAIVIGTMVVVSTLMRFVQESRSNTAADKLKEMVSNTATVIRHDLVADIAEEAQR 197
           TEDMKAAIVIGTMVVVSTL+RFVQE+RSNTAADKLK MVSNTATV+RHD V +IA EAQR
Sbjct: 121 TEDMKAAIVIGTMVVVSTLLRFVQEARSNTAADKLKAMVSNTATVMRHDQVEEIAAEAQR 180

Query: 198 YFDVTLHPKGAKRIELPIKKLVPGDIVQLSAGDMIPADLRLLSAKDLFVSQAAMTGESLP 257
           YFDVTLHPKGA+R+E+PI++LVPGDIV LSAGDMIPADLRLL+AKDLFVSQAAMTGESLP
Sbjct: 181 YFDVTLHPKGARRVEVPIRQLVPGDIVLLSAGDMIPADLRLLAAKDLFVSQAAMTGESLP 240

Query: 258 VEKF 261
           VEKF
Sbjct: 241 VEKF 244


>gi|300311691|ref|YP_003775783.1| cation transport ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 853

 Score = 57.4 bits (137), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 92/212 (43%), Gaps = 35/212 (16%)

Query: 86  GLTEQEADAIRAEVGPNEVEHEKPLSWWVHLWHCYKNPFNLLLTVLAAVSYYTEDMKAAI 145
           GL+  E   + AE GPN V H         L    + P  +LL   AA+     +++  +
Sbjct: 11  GLSHSEVTRLLAEDGPN-VLHSDQRRMGRVLMKVIREPMFMLLLSAAAIYLTLGELREGL 69

Query: 146 VIGTMVVVSTLMRFVQESRSNTAADKLKEMVSNTATVIRHDLVADIAEEAQRYFDVTLHP 205
           ++  MV ++  +   Q  ++  A   L+ + S TA VIR                     
Sbjct: 70  LLLFMVALTVGLTLYQGGKTERALAALRVLNSPTARVIRD-------------------- 109

Query: 206 KGAKRIELPIKKLVPGDIVQLSAGDMIPADLRLLSAKDLFVSQAAMTGESLPVEKFAEHR 265
              + + +   +LV GD++ L  G  +PAD  +L A +L + ++ +TGE+ PVEKFA   
Sbjct: 110 --GRTMRIAAAELVRGDLILLEEGARVPADAGVLEASNLQLDESLLTGEACPVEKFA--- 164

Query: 266 GARAGARWPSASPPPTA-PRPRSSRASTRSAG 296
                   PS  P P A P  ++  A+   +G
Sbjct: 165 --------PSTKPEPHALPSGQTDSATLVRSG 188


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.130    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 746,633
Number of extensions: 27845
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 2
Length of query: 297
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 212
Effective length of database: 1,217,395
Effective search space: 258087740
Effective search space used: 258087740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)