BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0054.p (396 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312679|ref|YP_003776771.1| periplasmic sensor signal trans... 513 e-146 gi|300309980|ref|YP_003774072.1| two component transmembrane sen... 200 2e-52 gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase tra... 166 4e-42 gi|300313819|ref|YP_003777911.1| two component sensor histidine ... 165 7e-42 gi|300314014|ref|YP_003778106.1| two component sensor histidine ... 156 3e-39 >gi|300312679|ref|YP_003776771.1| periplasmic sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 459 Score = 513 bits (1321), Expect = e-146, Method: Compositional matrix adjust. Identities = 244/390 (62%), Positives = 308/390 (78%) Query: 4 KTSLELTKQAEQMLRSDHFDTMYFVVRDSNGETLAGDHNFPPVNHVTAPNEPVTYDGVMN 63 +T+ ELT+QAEQ+LRS+H DT +F VR++ G+ + GD FP + + P+ YDG M Sbjct: 64 RTTAELTQQAEQILRSNHSDTTFFAVRNTEGQIVVGDKGFPQLPASDVFDRPINYDGEMR 123 Query: 64 GEQVRIAVLYVSIERTPIYIGIAETFRKRNQTHYVILISLLLLDGALTFFSIAIVMIAVN 123 GE VRIA + V ++ I++ +AET RKR++ HY IL+S L+LDGALTF SI +V++AV Sbjct: 124 GEPVRIAAMQVRVKNGVIWVAVAETIRKRDRAHYTILLSFLVLDGALTFASIFVVLVAVR 183 Query: 124 KGLSPLRELRQNLDQRNHDNLTPIEFKETAEELSPVIGAINSLLENIRKGASAQQNFLAN 183 +GL PL+ L++NL+QR+H L I+ + EL P+I A+N L+ I KG AQQNF+A+ Sbjct: 184 RGLRPLKSLQRNLEQRDHGKLGAIDGRGAPVELQPLIVAMNELMARINKGEQAQQNFMAD 243 Query: 184 VAHQIRTPLTGLRLQLEWLHQRHADEPETAHSTELMTSSVERMVRQSNQLLALARAEPSR 243 VAHQ+RTPLTGL+LQLE LH +H D+P+TA S +M SSVERM+RQS QLLALAR+EP Sbjct: 244 VAHQLRTPLTGLKLQLELLHDKHQDQPDTARSLAMMNSSVERMIRQSRQLLALARSEPGL 303 Query: 244 FKPTHLEDLLLDKLVEESVQHFIEQADKKQIDLGFDLQPARMKGDRFMLRDLIDNLVDNA 303 F+ LE+L LDKLVEESVQHFIE+ADKK+IDLGFDL+PAR++GDRF+L DLIDNL+DNA Sbjct: 304 FESRKLEELSLDKLVEESVQHFIEEADKKRIDLGFDLRPARLRGDRFLLSDLIDNLIDNA 363 Query: 304 VRYSPPQSTVTVSCREQEDATLLTVEDSGPGIAPEHRELIFDRFYRVNDKIAGSGLGLAI 363 VRYSPP TVTV C E++DAT+L+VEDSGPGIAPEHRELIFDRFYR NDK+AGSGLGLAI Sbjct: 364 VRYSPPHGTVTVRCLEEQDATVLSVEDSGPGIAPEHRELIFDRFYRANDKVAGSGLGLAI 423 Query: 364 VRDIAKDHGGEITLTSGEANCGTIFTVRFP 393 VR+IA DHGG I++ E GTIFTVRFP Sbjct: 424 VREIAHDHGGVISVDCKEQGQGTIFTVRFP 453 >gi|300309980|ref|YP_003774072.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 390 Score = 200 bits (509), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 127/357 (35%), Positives = 200/357 (56%), Gaps = 26/357 (7%) Query: 61 VMNGEQVRIAVLYVSIERTPIY-----------IGIAETFRKRNQTHYVILISLLLLDGA 109 +++G VRIA L V + R+ + + ET KR Q I+ ++L Sbjct: 22 ILHGSDVRIATLQVDLRRSAAQRAASREPRLATVQVGETLEKRAQLANEIIKGVILPQFI 81 Query: 110 LTFFSIAIVMIAVNKGLSPLRELRQNLDQRNHDNLTPIEFKETAEELSPVIGAINSLLEN 169 + ++A+V A+++GLSPL EL+Q + R D+L+PI+ + EE+SP++ ++N +L Sbjct: 82 ILPVALALVWFALSRGLSPLSELQQRIRARRPDDLSPIDSGQVPEEISPLVRSLNDMLAR 141 Query: 170 IRKGASAQQNFLANVAHQIRTPLTGLRLQLEWLHQRHADEPETAHSTELMTSSVERMVRQ 229 + + + Q+ F+A+ AHQ++TPL G+R+Q E L R D+ + S E + S E R Sbjct: 142 LSQTIAIQKRFIADAAHQMKTPLAGMRMQSE-LALRQDDQVDVRRSLEQLAKSSETATRL 200 Query: 230 SNQLLALARAEPSRFKPTHLEDLLLDKLVEESVQHFIEQADKKQIDLGFDL--QPARMKG 287 NQLL+LARAE + + + + L++L VQ ++ + ++IDLGF+ P + G Sbjct: 201 VNQLLSLARAENQQSQSGGMIPVELNELARSVVQDWVPMSFTQRIDLGFEQPDHPILITG 260 Query: 288 DRFMLRDLIDNLVDNAVRYSP--PQSTVTVSCREQEDATL--LTVEDSGPGIAPEHRELI 343 + MLR+L+ NL+DNA+ Y+P VTV R E L L VED+GPGI R + Sbjct: 261 NPVMLRELLSNLLDNALHYTPHDGNGRVTVRARTDEGGGLAILEVEDNGPGIPVAERANV 320 Query: 344 FDRFYRV---NDKIAGSGLGLAIVRDIAKDHGGEITLTSGEANC-----GTIFTVRF 392 F+RFYR+ +G GLGLAIVR+IA+ H + +TS + G +F V F Sbjct: 321 FERFYRILGTPSTGSGLGLGLAIVREIAQQHEAALEITSNPRSTDPKYPGCVFRVSF 377 >gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 459 Score = 166 bits (419), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 126/409 (30%), Positives = 203/409 (49%), Gaps = 31/409 (7%) Query: 3 GKTSLELTKQAEQMLRSDHFDTMYFVVRDSNGETLAGDHNFPPVNHVTAPNEPVTYDGVM 62 G + + A ++ S D +Y+ V + LAG +FP A PV Sbjct: 60 GAPVVSVPPAALELFASPAQDAVYYQVLMDDDTLLAGRPDFPAAPDFAA-LYPVYSTTSF 118 Query: 63 NGEQVRIA----VLYVSIERTPIYIGIAETFRKR-----NQTHYVILISLLLLDGALTFF 113 NG+ +R+ L+ + + + +T + R +Q H + ++LL Sbjct: 119 NGKPLRVVSYIRALFDEGTLRMVAVSVGQTMQGRQEMIDDQWHASLRRQIVLL-----LL 173 Query: 114 SIAIVMIAVNKGLSPLRELRQNLDQRNHDNLTPIEFKETAEELSPVIGAINSLLENIRKG 173 +I++V++ + L PL L+ L R D+LTP+ +EL P++ AIN + + Sbjct: 174 AISLVVLGLTMELRPLLALKDELATRRPDSLTPLRAGGLQQELRPIVEAINQYIFRLNAQ 233 Query: 174 ASAQQNFLANVAHQIRTPLTGLRLQLEWLHQRHADEPETAHSTELMTSSVE---RMVRQS 230 + Q+ F+A+ AHQ+RTPL + Q+++ R D+P A +++ S E M + Sbjct: 234 VTVQKRFVADAAHQLRTPLAVIDSQIQF--ARQLDDP--ARVAQVLASLQEGSRSMTDLT 289 Query: 231 NQLLALARAEPS---RFKPTHLEDLLLDKLVEESVQHFIEQADKKQIDLGFD--LQPARM 285 N+LL L++AE S F ++ L + +V E + A KK IDLG + L+ A + Sbjct: 290 NKLLLLSQAEASDSSAFPRAPVDLLAVSAMVLEELSGL---ALKKGIDLGLETTLESAMV 346 Query: 286 KGDRFMLRDLIDNLVDNAVRYSPPQSTVTVSCREQEDATLLTVEDSGPGIAPEHRELIFD 345 G+ L ++ NL+DNA+RY+P VTV ++ ++TV D+GPGI E RE +F+ Sbjct: 347 NGNEAQLMGMLMNLIDNALRYTPEGGKVTVGLEKKRSQMIITVSDNGPGIPAEVRERVFE 406 Query: 346 RFYR-VNDKIAGSGLGLAIVRDIAKDHGGEITLTSGEANCGTIFTVRFP 393 RFYR GSGLGLAIVR+I + G I L + G + TV P Sbjct: 407 RFYRNAAPDQPGSGLGLAIVREIVQASQGSIRLDAPAQGSGLVATVSLP 455 >gi|300313819|ref|YP_003777911.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 485 Score = 165 bits (417), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 129/419 (30%), Positives = 196/419 (46%), Gaps = 32/419 (7%) Query: 1 VRGKTSLELTKQAEQMLRSDHFDTMYFVVRDSNGETLAGDHNFPPV-----NHVTAPNEP 55 V G + ++ A +D+ +Y+ V NGE ++G + PPV P Sbjct: 64 VDGHVTADVPYVALDSFETDNLGRIYYKVTGLNGELVSGYDDLPPVPPDVKRSEVYPALV 123 Query: 56 VTYDGVMNGEQVRIAVL----YVSIERTPIYIGIAETFRKRNQTHYVILISLLLLDGALT 111 Y + + VRIA L Y R I + ET RN IL L G L Sbjct: 124 RFYQADYHDQPVRIAALLQPVYDDSIRGIALIQVGETMEGRNGMTRKILFDTLWRQGTLV 183 Query: 112 FFSIAIVMIAVNKGLSPLRELRQNLDQRNHDNLTPIEFKETAEELSPVIGAINSLLENIR 171 + +V AV L PL +L+ ++ R +L+ + +E+ P++ A+N + ++ Sbjct: 184 TVAALLVWFAVRFVLRPLMQLKGEVESRAPTDLSGFDTALVHKEMRPLVQAMNGYMGRLQ 243 Query: 172 KGASAQQNFLANVAHQIRTPLTGLRLQLEW----LHQRHADEPETAHSTELMTSSVERMV 227 SAQ+ F+A+ +HQ+RTPLT L+ Q E L + D E E M + + V Sbjct: 244 ALISAQRRFIADASHQLRTPLTVLKTQSELTLRELRREQVDAAELRDLVEGMARTTDAAV 303 Query: 228 RQSNQLLALARAEPSRFK----PTHLEDLLLDKLVEESVQHFIEQADKKQIDLGFDLQP- 282 +N+LL LARAE + P L D +E S +QA ++I L F+ + Sbjct: 304 HLANRLLTLARAEHGAAEGGTMPLSLSDAARQVALELS-----QQAVSREIGLAFEEEGD 358 Query: 283 ARMKGDRFMLRDLIDNLVDNAVRYSPPQSTVTVSCREQED-----ATLLTVEDSGPGIAP 337 ++ + +L +L+ NL+DNA+RY+P VT+ R Q LL VEDSGPGI Sbjct: 359 VSIEANALLLHELMVNLLDNAIRYTPAGGHVTLRVRAQSSPGQPTVALLEVEDSGPGIPA 418 Query: 338 EHRELIFDRFYRVND----KIAGSGLGLAIVRDIAKDHGGEITLTSGEANCGTIFTVRF 392 RE +F+ FYR G+GLGL+IVR+IA H +TL + G + + F Sbjct: 419 AEREKVFEPFYRAGATQHVNPGGTGLGLSIVREIAAMHRASVTLDAPAQGSGLVVRIVF 477 >gi|300314014|ref|YP_003778106.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 467 Score = 156 bits (394), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 116/394 (29%), Positives = 182/394 (46%), Gaps = 15/394 (3%) Query: 3 GKTSLELTKQAEQMLRSDHFDTMYFVVRDSNGETLAGDHNFPPVN-----HVTAPNEPVT 57 G+ L A ++ +D+ M + + +G+ GD + P P Sbjct: 66 GELKASLPYAALEIYEADYSSRMIYRINGLDGKFFDGDADLPSYKGKADKEAIYPALAHI 125 Query: 58 YDGVMNGEQVRIAVLYVSI----ERTPIYIGIAETFRKRNQTHYVILISLLLLDGALTFF 113 Y+ NG VR+A L+ + R + +AET R+ I L+ AL Sbjct: 126 YEDTYNGVPVRVAALFQPVVTNDPRGAALVQVAETMENRSALARKIFWETLIRQAALLVV 185 Query: 114 SIAIVMIAVNKGLSPLRELRQNLDQRNHDNLTPIEFKETAEELSPVIGAINSLLENIRKG 173 +++ + V + L P+ LR+ LD+R D+L+P+ EL P I A+N L+ +R+ Sbjct: 186 IVSVTLYVVRRALQPVDALRRQLDERPADDLSPVAPPMAPRELQPFIDALNQLMARLRRL 245 Query: 174 ASAQQNFLANVAHQIRTPLTGLRLQLEWLHQRHADEPETAHSTELMTSSVERMVRQSNQL 233 QQ F+AN +HQ+RTPL L+ QL+ D P E M+ +VER +NQL Sbjct: 246 LDHQQRFVANASHQLRTPLAVLKTQLQ--SGLRGDAPAPVIWQE-MSGTVERATTLANQL 302 Query: 234 LALARAEPSRFKPTHLEDLLLDKLVEESVQHFIEQADKKQIDLGFDLQPARMKGDRFMLR 293 L+LA+ E R + E L L E+ +K +D + + + G +M+ Sbjct: 303 LSLAKVEQIRGRGAQ-EVCDLGMLARETAVDLSPLIAEKDLDFELEAEKILVMGHPWMIG 361 Query: 294 DLIDNLVDNAVRYSPPQSTVTVSCREQEDATLLTVEDSGPGIAPEHRELIFDRFYRVNDK 353 +LI NL+ NA+R++P Q + + +ED L + DSG GI + E +F F N Sbjct: 362 ELISNLLHNAIRHTPAQGRLGIRITAREDVAELLIWDSGEGIDDQAMENVFKAFSS-NVS 420 Query: 354 IAGSGLGLAIVRDIAKDHGGEITLTSGEANCGTI 387 AG GLGL I +I I+L + GTI Sbjct: 421 SAG-GLGLTICGEIVDSMQATISLRNRVGEDGTI 453 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,137,328 Number of extensions: 45733 Number of successful extensions: 304 Number of sequences better than 1.0e-08: 45 Number of HSP's gapped: 213 Number of HSP's successfully gapped: 45 Length of query: 396 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 309 Effective length of database: 1,207,925 Effective search space: 373248825 Effective search space used: 373248825 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)