BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0052.p (222 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312680|ref|YP_003776772.1| two component response regulato... 374 e-105 gi|300309981|ref|YP_003774073.1| two component response regulato... 217 7e-58 gi|300313818|ref|YP_003777910.1| two component transcription reg... 178 2e-46 gi|300312688|ref|YP_003776780.1| response regulator consisting o... 169 2e-43 gi|300311842|ref|YP_003775934.1| response regulator transcriptio... 163 1e-41 >gi|300312680|ref|YP_003776772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 220 Score = 374 bits (960), Expect = e-105, Method: Compositional matrix adjust. Identities = 184/222 (82%), Positives = 201/222 (90%), Gaps = 2/222 (0%) Query: 1 MNVLLVEDDLVLADGLSRMLKSHGLSVNTVNNGTDADALLQRYTATVLVLDIGLPGLDGF 60 MNVLLVEDD VL DGLSR+L SHG +V+TVNNG DA L QR+ A VLVLDIGLPG+DGF Sbjct: 1 MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDA--LSQRFNAAVLVLDIGLPGIDGF 58 Query: 61 EVVRRLRARGSNMPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSS 120 EV+RR+RA G+N PVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRS+ Sbjct: 59 EVLRRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSA 118 Query: 121 PQPTQLTIGGLSLDTSSKRATIDGKKVDFSVREWTVLEYLMQQASRVVSKQQIIDAVLPW 180 PQP QLT+GGLSLD ++KRA IDG+K++ S+REWTVLEYLMQ ASRVVSKQQIIDAVLPW Sbjct: 119 PQPAQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPW 178 Query: 181 GEDVTLNAVEVYVSRIRTKTAGSGVAIRTIRGFGYMLEKSEA 222 GED T+NAVEVYVSRIR K A SGVAIRTIRGFGYMLEKSEA Sbjct: 179 GEDFTINAVEVYVSRIRLKIADSGVAIRTIRGFGYMLEKSEA 220 >gi|300309981|ref|YP_003774073.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 217 bits (552), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 111/220 (50%), Positives = 150/220 (68%), Gaps = 1/220 (0%) Query: 1 MNVLLVEDDLVLADGLSRMLKSHGLSVNTVNNGTDADALLQRYTATVLVLDIGLPGLDGF 60 M +LL EDD VLADGL+R L+ G + + V NG +AD+ L +L+LD+GLP + G Sbjct: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 Query: 61 EVVRRLRARGSNMPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRR-S 119 EV+RRLRAR S +PVL+LTA D++ RV GL+LGADDY+ KPFA EL AR++AL RR + Sbjct: 61 EVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGA 120 Query: 120 SPQPTQLTIGGLSLDTSSKRATIDGKKVDFSVREWTVLEYLMQQASRVVSKQQIIDAVLP 179 PT + G LS D + A I + ++ S RE +LE L+Q+ R+VSK+Q++D + Sbjct: 121 GGGPTVIRHGPLSYDQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCE 180 Query: 180 WGEDVTLNAVEVYVSRIRTKTAGSGVAIRTIRGFGYMLEK 219 WGE+V+ NA+EVYV R+R K GV I T+RG GY LEK Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEVGGVRIATVRGLGYCLEK 220 >gi|300313818|ref|YP_003777910.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 224 Score = 178 bits (452), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 93/224 (41%), Positives = 143/224 (63%), Gaps = 4/224 (1%) Query: 1 MNVLLVEDDLVLADGLSRMLKSHGLSVNTVNNGTDADALLQRYTATVLVLDIGLPGLDGF 60 M +LLVED + L+ L++ ++ L+V +NG DAD+LL +++LD+ LP +DG Sbjct: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGM 60 Query: 61 EVVRRLRARGSNMPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRS- 119 EV++R+RARG+ PVL+LTAR + DRV GL +GADDYL KPF EL AR+KAL+RRS Sbjct: 61 EVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 Query: 120 SPQPTQLTIGGLSLDTSSKRATIDGKKVDFSVREWTVLEYLMQQASRVVSKQQIIDAVLP 179 + + ++ G LS DT S+ T G+ + + RE VLE L+ + V K+++ V Sbjct: 121 NNEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTVPKEKLFQQVFT 180 Query: 180 WGEDVTLNAVEVYVSRIRTKTAGSG---VAIRTIRGFGYMLEKS 220 ++ +++A+E+Y+ R+R K G V I T+RG GY+L+ + Sbjct: 181 LEDNASMDAIEIYIHRLRKKLEHEGPGRVGITTLRGLGYLLQAT 224 >gi|300312688|ref|YP_003776780.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 169 bits (427), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 91/222 (40%), Positives = 138/222 (62%), Gaps = 1/222 (0%) Query: 1 MNVLLVEDDLVLADGLSRMLKSHGLSVNTVNNGTDADALLQRYTATVLVLDIGLPGLDGF 60 M +LL+ED+ LA L ++LK H V+ +G AD +L+ V++LD+ LP L G Sbjct: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 Query: 61 EVVRRLRARGSNMPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSS 120 V+RRLR R + +PV++LTA +I ++V L GADDYLVKPF ELVARIK L+RR + Sbjct: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 Query: 121 P-QPTQLTIGGLSLDTSSKRATIDGKKVDFSVREWTVLEYLMQQASRVVSKQQIIDAVLP 179 P + ++ G L D+++++ + G + RE VLE L+ + + VSK ++ V Sbjct: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 Query: 180 WGEDVTLNAVEVYVSRIRTKTAGSGVAIRTIRGFGYMLEKSE 221 E+ + +A+EVY+SR+R K SG AI T+RG GY+L + + Sbjct: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLRQRD 222 >gi|300311842|ref|YP_003775934.1| response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 239 Score = 163 bits (413), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 90/218 (41%), Positives = 136/218 (62%), Gaps = 2/218 (0%) Query: 1 MNVLLVEDDLVLADGLSRMLKSHGLSVNTVNNGTDADALLQRYTATVLVLDIGLPGLDGF 60 M +LLVED +A+ + L G +V +NG A L + +L+LD+ LP DGF Sbjct: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHASRRLSE-SYDLLILDVMLPQQDGF 59 Query: 61 EVVRRLRARGSNMPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSS 120 ++++LR RG + PVL+LTA + +RV L+LGADDYLVKPF EL ARI+ L+RRS Sbjct: 60 SLLQQLRTRGHHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSG 119 Query: 121 PQPTQ-LTIGGLSLDTSSKRATIDGKKVDFSVREWTVLEYLMQQASRVVSKQQIIDAVLP 179 + T L LS+D S+ AT+DG+ ++ + RE T+LE + + R+ +K +++D + Sbjct: 120 GESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 Query: 180 WGEDVTLNAVEVYVSRIRTKTAGSGVAIRTIRGFGYML 217 ++ + N+VE YV+R+R K A + IRT+RG GY L Sbjct: 180 VDDNPSANSVEQYVARLRKKLAAAAFEIRTLRGLGYQL 217 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 612,444 Number of extensions: 24338 Number of successful extensions: 211 Number of sequences better than 1.0e-08: 42 Number of HSP's gapped: 193 Number of HSP's successfully gapped: 42 Length of query: 222 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 140 Effective length of database: 1,231,600 Effective search space: 172424000 Effective search space used: 172424000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)