BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0050.p (153 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312682|ref|YP_003776774.1| iron-regulated protein [Herbasp... 187 3e-49 gi|300312553|ref|YP_003776645.1| PKHD-type hydroxylase [Herbaspi... 105 2e-24 gi|300313662|ref|YP_003777754.1| PKHD-type hydroxylase [Herbaspi... 85 3e-18 >gi|300312682|ref|YP_003776774.1| iron-regulated protein [Herbaspirillum seropedicae SmR1] Length = 228 Score = 187 bits (476), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 88/108 (81%), Positives = 93/108 (86%) Query: 1 MLIAIPKLLDAQQLNTVRQLLEQAGPAWVDGRATAGYQGAPVKYNQQIDERSEVAAQCQH 60 MLI IP+LLD Q L TVR LLEQAG AWVDGR TAGYQGAPVK+NQQIDE SEVA QCQ Sbjct: 1 MLITIPQLLDTQALQTVRSLLEQAGEAWVDGRVTAGYQGAPVKFNQQIDEHSEVALQCQR 60 Query: 61 IILSALERNPRFISAALPNTVYPPMFNRYSEGMTFGAHVDGSVRIXPR 108 II+SALER+PRFISAALPN +YPPMFNRY EGM FGAHVDGSVRI P Sbjct: 61 IIVSALERHPRFISAALPNLIYPPMFNRYGEGMHFGAHVDGSVRIHPH 108 >gi|300312553|ref|YP_003776645.1| PKHD-type hydroxylase [Herbaspirillum seropedicae SmR1] Length = 226 Score = 105 bits (262), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 54/112 (48%), Positives = 71/112 (63%), Gaps = 2/112 (1%) Query: 1 MLIAIPKLLDAQQLNTVRQLLEQAGPAWVDGRATAGYQGAPVKYNQQIDERSEVAAQCQH 60 M++ IP++L A+Q+ +R L +A WVDGRAT G QGA VK N+Q+ E S + + Sbjct: 1 MMLHIPEVLSAEQVRHIRAELARAD--WVDGRATVGDQGARVKRNRQLPEHSPLGFKLGE 58 Query: 61 IILSALERNPRFISAALPNTVYPPMFNRYSEGMTFGAHVDGSVRIXPRIPGA 112 IIL AL +NP F +AALP PP+FN Y G +G HVDGSVR P G+ Sbjct: 59 IILEALRKNPLFFAAALPKKTIPPLFNSYEGGEHYGLHVDGSVRNLPNAVGS 110 >gi|300313662|ref|YP_003777754.1| PKHD-type hydroxylase [Herbaspirillum seropedicae SmR1] Length = 227 Score = 85.1 bits (209), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 45/108 (41%), Positives = 64/108 (59%), Gaps = 3/108 (2%) Query: 1 MLIAIPKLLDAQQLNTVRQLLEQAGPAWVDGRATAGYQGAPVKYNQQIDERSEVAAQCQH 60 M++ + ++L ++ R LLEQA W+DGR T+G +K N+Q+ E+S A Q Sbjct: 1 MMLHLKQVLSTDEVTRARALLEQA--QWIDGRVTSGSLPDTLKQNRQLPEQSASAVPLQQ 58 Query: 61 IILSALERNPRFISAALPNTVYPPMFNRYSEGMT-FGAHVDGSVRIXP 107 ++L+AL RN F SAALP + PMFNRY G G HVD ++R P Sbjct: 59 MVLAALRRNTLFFSAALPRQIVTPMFNRYGAGGDHLGDHVDVAMRFMP 106 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.136 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 484,296 Number of extensions: 17751 Number of successful extensions: 47 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 46 Number of HSP's successfully gapped: 3 Length of query: 153 Length of database: 1,619,870 Length adjustment: 77 Effective length of query: 76 Effective length of database: 1,255,275 Effective search space: 95400900 Effective search space used: 95400900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 126 (53.1 bits)