BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0045.p (162 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate A... 287 3e-79 gi|300312969|ref|YP_003777061.1| nitrate/sulfonate/bicarbonate A... 165 2e-42 gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 115 2e-27 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 113 8e-27 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 110 5e-26 >gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 275 Score = 287 bits (735), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 139/161 (86%), Positives = 148/161 (91%), Gaps = 1/161 (0%) Query: 1 MNQTATASAKTANKLDTPAIELDNVSCRFITADGNVTVALRDFSMSVARGEFVAVVGPTG 60 +NQ A A A + +TPAIEL NVSCRFITADG TVALRDFSMSVARGEFVAVVGPTG Sbjct: 4 INQHAFTPAGQAAQ-ETPAIELRNVSCRFITADGRATVALRDFSMSVARGEFVAVVGPTG 62 Query: 61 CGKSTTLSLITGLLKPTIGEVRVMGEPVNGIDPRIGFVFQNDAVFPWRSVRDNVAAGPLF 120 CGKSTTLSLITGLLKPT+GEVRVMG+PVNGIDPRIGFVFQNDAVFPWRSVR+NVAAGPLF Sbjct: 63 CGKSTTLSLITGLLKPTLGEVRVMGQPVNGIDPRIGFVFQNDAVFPWRSVRENVAAGPLF 122 Query: 121 RGKPKDQAYELANEWIRRVGLDKFGDHYPHQLSGGMRKRVA 161 RG+PK QA+ LA+EWIRRVGLDKFGDHYPHQLSGGMRKRVA Sbjct: 123 RGQPKAQAHALADEWIRRVGLDKFGDHYPHQLSGGMRKRVA 163 >gi|300312969|ref|YP_003777061.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 165 bits (418), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 77/147 (52%), Positives = 104/147 (70%), Gaps = 2/147 (1%) Query: 17 TPAIELDNVSCRFITAD--GNVTVALRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLL 74 TPA++ DN++C F++ D A+ + +++A GEFV+VVGPTGCGKST L++ GLL Sbjct: 2 TPALQFDNITCTFVSKDDRSQRYTAVANTDLAIAPGEFVSVVGPTGCGKSTLLNVGAGLL 61 Query: 75 KPTIGEVRVMGEPVNGIDPRIGFVFQNDAVFPWRSVRDNVAAGPLFRGKPKDQAYELANE 134 +P+ G V+V GE + GI+ R G++FQ +A+ PWRS NV AG +RG + A EL + Sbjct: 62 QPSSGSVKVFGEELKGINRRAGYMFQAEALMPWRSALQNVIAGLQYRGHEEKAAAELGEQ 121 Query: 135 WIRRVGLDKFGDHYPHQLSGGMRKRVA 161 W+ RVGL FGD YPHQLSGGMRKRVA Sbjct: 122 WLARVGLQGFGDRYPHQLSGGMRKRVA 148 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 115 bits (288), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 58/142 (40%), Positives = 86/142 (60%), Gaps = 5/142 (3%) Query: 20 IELDNVSCRFITADGNVTVALRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLLKPTIG 79 + +NV+ F G++ V + +F+ +A GE VA+VGP+GCGKST L + GL KP+ G Sbjct: 3 LSFNNVAKHF----GDLHV-IEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSG 57 Query: 80 EVRVMGEPVNGIDPRIGFVFQNDAVFPWRSVRDNVAAGPLFRGKPKDQAYELANEWIRRV 139 V G+ + G P +FQ +A++PW +++ NVA F+ K +A E A W+ V Sbjct: 58 SVAGDGQTIRGPHPERTLMFQENALYPWLTLQQNVALALEFQSVDKKKAAEQARVWLENV 117 Query: 140 GLDKFGDHYPHQLSGGMRKRVA 161 L F +YPHQ+SGGMR+R A Sbjct: 118 KLKGFEHYYPHQVSGGMRQRAA 139 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 113 bits (282), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 59/141 (41%), Positives = 83/141 (58%) Query: 20 IELDNVSCRFITADGNVTVALRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLLKPTIG 79 ++++N S F D AL S+ + G FV +G +GCGKST L+ + G L + G Sbjct: 2 LKVENASVYFSGRDKQRVHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEG 61 Query: 80 EVRVMGEPVNGIDPRIGFVFQNDAVFPWRSVRDNVAAGPLFRGKPKDQAYELANEWIRRV 139 + + G+PV+G G VFQ D++ PW+SV+DNVA G F G K + E A E +R V Sbjct: 62 RISLDGQPVSGPGAERGVVFQKDSLLPWKSVQDNVALGLKFAGVSKSDSRERAQELLRLV 121 Query: 140 GLDKFGDHYPHQLSGGMRKRV 160 GL F P++LSGGMR+RV Sbjct: 122 GLQDFARAAPYELSGGMRQRV 142 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 110 bits (276), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 58/145 (40%), Positives = 86/145 (59%), Gaps = 1/145 (0%) Query: 17 TPAIELDNVSCRFITADGNVTVALRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLLKP 76 +P I + V F T D V VAL+D ++ + G+FV ++GP+GCGKST L+ I G P Sbjct: 7 SPRIRIQGVHKVFKTDDREV-VALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALP 65 Query: 77 TIGEVRVMGEPVNGIDPRIGFVFQNDAVFPWRSVRDNVAAGPLFRGKPKDQAYELANEWI 136 + G++ + V+ P G VFQ A+FPW +V NVA G +G PK + ++ + + Sbjct: 66 SSGQILTDDKVVSEPGPDRGMVFQEYALFPWMTVEQNVAFGLEIKGTPKAEIHQRVTQLL 125 Query: 137 RRVGLDKFGDHYPHQLSGGMRKRVA 161 ++GL F +P LSGGMR+RVA Sbjct: 126 DKLGLIDFRTRFPKDLSGGMRQRVA 150 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 515,520 Number of extensions: 21026 Number of successful extensions: 353 Number of sequences better than 1.0e-08: 79 Number of HSP's gapped: 276 Number of HSP's successfully gapped: 80 Length of query: 162 Length of database: 1,619,870 Length adjustment: 78 Effective length of query: 84 Effective length of database: 1,250,540 Effective search space: 105045360 Effective search space used: 105045360 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)