BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0044.p
         (107 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312686|ref|YP_003776778.1| nitrate/sulfonate/bicarbonate A...   198   7e-53
gi|300312687|ref|YP_003776779.1| nitrate/sulfonate/bicarbonate A...   174   1e-45
gi|300312970|ref|YP_003777062.1| nitrate/sulfonate/bicarbonate A...    72   1e-14

>gi|300312686|ref|YP_003776778.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 337

 Score =  198 bits (504), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 89/107 (83%), Positives = 100/107 (93%)

Query: 1   VQRNWLNGHKDDAAKLARAFVKTLKFIKTHSAAEIADKMPKDYYGNNKPLYIQALENSLP 60
           VQR+WLN HK+DA KLARAFVKTL+FI+TH+A +IADKMPKDYYGNNKPLYIQAL NSLP
Sbjct: 231 VQRSWLNSHKEDAQKLARAFVKTLRFIQTHTAEQIADKMPKDYYGNNKPLYIQALTNSLP 290

Query: 61  MYSADGKMPAGGPETVLSVLAGFNPNVKGKHIDLSKTYTNEFVNLVK 107
           MYS DGKMP GGP+TVL+VL+GFNPNVKGKH+DLSKTYT+EFVN VK
Sbjct: 291 MYSQDGKMPKGGPQTVLAVLSGFNPNVKGKHVDLSKTYTDEFVNAVK 337


>gi|300312687|ref|YP_003776779.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 353

 Score =  174 bits (442), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 78/107 (72%), Positives = 94/107 (87%)

Query: 1   VQRNWLNGHKDDAAKLARAFVKTLKFIKTHSAAEIADKMPKDYYGNNKPLYIQALENSLP 60
           V R+W+N HK ++ KLAR FVKTL++I+THSA +IADKMPKDYYG +K +Y+QAL+ SLP
Sbjct: 247 VHRSWMNSHKAESQKLARVFVKTLRYIQTHSAEDIADKMPKDYYGGSKAIYVQALKASLP 306

Query: 61  MYSADGKMPAGGPETVLSVLAGFNPNVKGKHIDLSKTYTNEFVNLVK 107
           MYS DGKMPAGGPE VL V+AGFNPN+KGK+IDLSKTYTNEFV+ VK
Sbjct: 307 MYSPDGKMPAGGPEQVLKVMAGFNPNIKGKNIDLSKTYTNEFVDQVK 353


>gi|300312970|ref|YP_003777062.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 345

 Score = 72.0 bits (175), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 53/100 (53%)

Query: 5   WLNGHKDDAAKLARAFVKTLKFIKTHSAAEIADKMPKDYYGNNKPLYIQALENSLPMYSA 64
           ++  + +    L  A V+ LK+I+    ++I   +P+ Y   ++ LYI A        S 
Sbjct: 239 FIQKYPNTTQALTNAMVRALKWIQKAGPSDIIKAVPESYLLGDRSLYIDAFMKVRQAISP 298

Query: 65  DGKMPAGGPETVLSVLAGFNPNVKGKHIDLSKTYTNEFVN 104
           DG  P GGP+T L  L  F P++  K IDLSKT+TN FV 
Sbjct: 299 DGYFPPGGPDTALRTLKAFEPSLADKQIDLSKTFTNSFVQ 338


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.132    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 339,027
Number of extensions: 12435
Number of successful extensions: 34
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 3
Length of query: 107
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 35
Effective length of database: 1,278,950
Effective search space: 44763250
Effective search space used: 44763250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 124 (52.4 bits)