BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0042.p
         (69 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312687|ref|YP_003776779.1| nitrate/sulfonate/bicarbonate A...   130   2e-32
gi|300312686|ref|YP_003776778.1| nitrate/sulfonate/bicarbonate A...   109   3e-26
gi|300312970|ref|YP_003777062.1| nitrate/sulfonate/bicarbonate A...    60   3e-11

>gi|300312687|ref|YP_003776779.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 353

 Score =  130 bits (326), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 61/69 (88%), Positives = 65/69 (94%)

Query: 1   MPADYYGGNKALYVQALKASLPMYSPDGKMPAEGPEVVLKVMAGFNPNIKGKKIDLSRTY 60
           MP DYYGG+KA+YVQALKASLPMYSPDGKMPA GPE VLKVMAGFNPNIKGK IDLS+TY
Sbjct: 285 MPKDYYGGSKAIYVQALKASLPMYSPDGKMPAGGPEQVLKVMAGFNPNIKGKNIDLSKTY 344

Query: 61  TNEFVNQVK 69
           TNEFV+QVK
Sbjct: 345 TNEFVDQVK 353


>gi|300312686|ref|YP_003776778.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 337

 Score =  109 bits (273), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 49/69 (71%), Positives = 57/69 (82%)

Query: 1   MPADYYGGNKALYVQALKASLPMYSPDGKMPAEGPEVVLKVMAGFNPNIKGKKIDLSRTY 60
           MP DYYG NK LY+QAL  SLPMYS DGKMP  GP+ VL V++GFNPN+KGK +DLS+TY
Sbjct: 269 MPKDYYGNNKPLYIQALTNSLPMYSQDGKMPKGGPQTVLAVLSGFNPNVKGKHVDLSKTY 328

Query: 61  TNEFVNQVK 69
           T+EFVN VK
Sbjct: 329 TDEFVNAVK 337


>gi|300312970|ref|YP_003777062.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 345

 Score = 60.5 bits (145), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 40/67 (59%)

Query: 1   MPADYYGGNKALYVQALKASLPMYSPDGKMPAEGPEVVLKVMAGFNPNIKGKKIDLSRTY 60
           +P  Y  G+++LY+ A        SPDG  P  GP+  L+ +  F P++  K+IDLS+T+
Sbjct: 273 VPESYLLGDRSLYIDAFMKVRQAISPDGYFPPGGPDTALRTLKAFEPSLADKQIDLSKTF 332

Query: 61  TNEFVNQ 67
           TN FV +
Sbjct: 333 TNSFVQK 339


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.134    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 220,121
Number of extensions: 7107
Number of successful extensions: 24
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 3
Length of query: 69
Length of database: 1,619,870
Length adjustment: 41
Effective length of query: 28
Effective length of database: 1,425,735
Effective search space: 39920580
Effective search space used: 39920580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 123 (52.0 bits)