BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0041.p
         (263 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312687|ref|YP_003776779.1| nitrate/sulfonate/bicarbonate A...   336   1e-93
gi|300312686|ref|YP_003776778.1| nitrate/sulfonate/bicarbonate A...   260   9e-71
gi|300312970|ref|YP_003777062.1| nitrate/sulfonate/bicarbonate A...   129   3e-31

>gi|300312687|ref|YP_003776779.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 353

 Score =  336 bits (861), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 174/208 (83%), Positives = 186/208 (89%), Gaps = 2/208 (0%)

Query: 13  GTVFSTALIGAAVLTVAAPAAQAADNKITIMVGGINKLIYLPPKLAENLGYFKEEGLDVE 72
           G   STA I A  L +AAP A+AAD KI IMVGGINKLIYLPPKLAE+LGYFKEEGLDVE
Sbjct: 23  GITVSTA-ITACALGLAAPQARAAD-KIIIMVGGINKLIYLPPKLAESLGYFKEEGLDVE 80

Query: 73  LQSQQAGVDAENELLAGAVQAVVGYYDHSIDLQSKGKEVLSITQLLVVPGGMEMVRSDLA 132
           LQSQ AGVDAENELLAGAVQAVVGYYDHSIDLQSKGKEV SI QLL+VPGGMEMVR+DLA
Sbjct: 81  LQSQPAGVDAENELLAGAVQAVVGYYDHSIDLQSKGKEVTSIAQLLLVPGGMEMVRADLA 140

Query: 133 TQVRSMADLKGRTLGVTGLGSSSSFLAQYLASRNGLKTSDYSMLPVGAGNTLIAALKQKR 192
             VRSMADLKG+TLGVTGLGSSSSF+AQYLA+R GLK  DYS+LPVGAGNTLIAA+KQKR
Sbjct: 141 DSVRSMADLKGKTLGVTGLGSSSSFIAQYLANRAGLKAGDYSILPVGAGNTLIAAMKQKR 200

Query: 193 VDVVWTTEPTTSMLLASGEAKVLVDMXT 220
           VDV WTTEPTTS+LLASG AKVLVDM +
Sbjct: 201 VDVAWTTEPTTSILLASGAAKVLVDMSS 228


>gi|300312686|ref|YP_003776778.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 337

 Score =  260 bits (664), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 128/182 (70%), Positives = 152/182 (83%)

Query: 39  KITIMVGGINKLIYLPPKLAENLGYFKEEGLDVELQSQQAGVDAENELLAGAVQAVVGYY 98
           KITIMVGGINK++YLP KLAE LGYFKEEGLDVELQSQ AGVDAENELLAGAVQAVVG+Y
Sbjct: 31  KITIMVGGINKMVYLPAKLAEQLGYFKEEGLDVELQSQPAGVDAENELLAGAVQAVVGFY 90

Query: 99  DHSIDLQSKGKEVLSITQLLVVPGGMEMVRSDLATQVRSMADLKGRTLGVTGLGSSSSFL 158
           DHSIDLQ+KGKE+ +I  L  VPG +E+V +  A   +SMAD KG+TLGVTGLGSS++FL
Sbjct: 91  DHSIDLQTKGKEITAIVILGQVPGEVELVSTKAAPHFQSMADAKGKTLGVTGLGSSTNFL 150

Query: 159 AQYLASRNGLKTSDYSMLPVGAGNTLIAALKQKRVDVVWTTEPTTSMLLASGEAKVLVDM 218
            QYLASR+G+ +  +S+LPVGA NT IAA+KQ R+D   TTEPT S LL +G+A+VLVD+
Sbjct: 151 TQYLASRHGITSKQFSVLPVGADNTFIAAMKQGRIDAGMTTEPTASQLLKTGDAQVLVDL 210

Query: 219 XT 220
            T
Sbjct: 211 RT 212


>gi|300312970|ref|YP_003777062.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 345

 Score =  129 bits (323), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/201 (37%), Positives = 115/201 (57%), Gaps = 3/201 (1%)

Query: 33  AQAADN-KITIMVGGINKLIYLPPKLAENLGYFKEEGLDVELQSQQAGVDAENELLAGAV 91
           AQA +  K++I VGG N   YLP  +AE LGYFK+EGL VE+     G  A   ++ G+ 
Sbjct: 28  AQALEKPKVSIAVGGKNLFYYLPLTIAEQLGYFKDEGLQVEISDFAGGAKALQAMVGGSA 87

Query: 92  QAVVGYYDHSIDLQSKGKEVLSITQLLVVPGGMEMVRSDLATQVRSMADLKGRTLGVTGL 151
             V G Y+H+I++Q+K + +++       P  +  V +      +++ADLKG+ +GVT  
Sbjct: 88  DVVSGAYEHTINMQAKNQPIVAFVLQGRAPQIVLAVNNKTMPNYKTVADLKGKKIGVTAP 147

Query: 152 GSSSSFLAQYLASRNGLKTSDYSMLPVGAGNTLIAALKQKRVDVVWTTEPTTSMLLASGE 211
           GSS+S +A Y+ ++ GLK SD S + VGA    I+A++  ++D +   +P  SML  S E
Sbjct: 148 GSSTSVMASYVLAKAGLKPSDVSFIGVGAAAGAISAVRSGQIDAIANLDPVISMLEQSKE 207

Query: 212 AKVLVDMXTRRAGRPVSGFGG 232
            K + D  T +    V  FGG
Sbjct: 208 IKTIADTRTLKDTNDV--FGG 226


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 686,859
Number of extensions: 24531
Number of successful extensions: 114
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 4
Length of query: 263
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 180
Effective length of database: 1,226,865
Effective search space: 220835700
Effective search space used: 220835700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)