BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0040.p (240 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312688|ref|YP_003776780.1| response regulator consisting o... 395 e-111 gi|300313818|ref|YP_003777910.1| two component transcription reg... 222 3e-59 gi|300309981|ref|YP_003774073.1| two component response regulato... 186 2e-48 gi|300311842|ref|YP_003775934.1| response regulator transcriptio... 175 3e-45 gi|300312680|ref|YP_003776772.1| two component response regulato... 169 3e-43 >gi|300312688|ref|YP_003776780.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 395 bits (1015), Expect = e-111, Method: Compositional matrix adjust. Identities = 188/222 (84%), Positives = 208/222 (93%) Query: 15 MKLLLIEDNPPLAHWLTQILRENKFSVDVASDGEMADHVLHTENYDVVLLDLMLPKMHGK 74 MKLLLIEDNP LAHWL QIL+E+KF VD+A+DGE+AD VL ENYDVVLLDLMLPK+HGK Sbjct: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 Query: 75 NVLRRLRERHNAVPVMILTASGSIDEKVECLGAGADDYLVKPFEVRELVARIKVLIRRQT 134 NVLRRLRERHN VPVMILTASGSIDEKVECLGAGADDYLVKPFE+RELVARIKVL+RRQT Sbjct: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 Query: 135 PDKAAEIHCGDLSYDSNTRQFAIAGKTLALPAREHDVLEILMLKQGKTVSKNALVNGIFS 194 PDKAAEIHCG+L YDSNTRQFA+ G TLALPAREHDVLE+L+L+QGKTVSK AL+ G+FS Sbjct: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 Query: 195 LSDEPSADAIEIYISRLRKKLEPSQAAIMTLRGLGYLLKQKD 236 LS+EPSADAIE+YISRLRKKL+ S AAIMTLRGLGYLL+Q+D Sbjct: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLRQRD 222 >gi|300313818|ref|YP_003777910.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 224 Score = 222 bits (565), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 111/222 (50%), Positives = 151/222 (68%), Gaps = 3/222 (1%) Query: 15 MKLLLIEDNPPLAHWLTQILRENKFSVDVASDGEMADHVLHTENYDVVLLDLMLPKMHGK 74 M++LL+ED+ L+ WL + +R+ +V+ A +G AD +L T++Y +V+LDL LP+M G Sbjct: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGM 60 Query: 75 NVLRRLRERHNAVPVMILTASGSIDEKVECLGAGADDYLVKPFEVRELVARIKVLIRRQT 134 VL+R+R R N PV+ILTA G + ++V L GADDYL KPFE+ EL AR+K L+RR Sbjct: 61 EVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 Query: 135 PDKAAEIHCGDLSYDSNTRQFAIAGKTLALPAREHDVLEILMLKQGKTVSKNALVNGIFS 194 ++A + CG LS+D+ +R F G+ LAL REH VLE L+++ G TV K L +F+ Sbjct: 121 NNEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTVPKEKLFQQVFT 180 Query: 195 LSDEPSADAIEIYISRLRKKLE---PSQAAIMTLRGLGYLLK 233 L D S DAIEIYI RLRKKLE P + I TLRGLGYLL+ Sbjct: 181 LEDNASMDAIEIYIHRLRKKLEHEGPGRVGITTLRGLGYLLQ 222 >gi|300309981|ref|YP_003774073.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 186 bits (471), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 99/220 (45%), Positives = 143/220 (65%) Query: 15 MKLLLIEDNPPLAHWLTQILRENKFSVDVASDGEMADHVLHTENYDVVLLDLMLPKMHGK 74 M++LL ED+ LA LT+ LR + ++ D +G AD L T+++D+++LDL LPKM G Sbjct: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 Query: 75 NVLRRLRERHNAVPVMILTASGSIDEKVECLGAGADDYLVKPFEVRELVARIKVLIRRQT 134 VLRRLR R++ +PV+ILTA+ S++++V+ L GADDY+ KPF + EL AR++ L RR Sbjct: 61 EVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGA 120 Query: 135 PDKAAEIHCGDLSYDSNTRQFAIAGKTLALPAREHDVLEILMLKQGKTVSKNALVNGIFS 194 I G LSYD R I + L L ARE +LE+L+ + G+ VSK LV+ + Sbjct: 121 GGGPTVIRHGPLSYDQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCE 180 Query: 195 LSDEPSADAIEIYISRLRKKLEPSQAAIMTLRGLGYLLKQ 234 +E S +AIE+Y+ RLRKK+E I T+RGLGY L++ Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEVGGVRIATVRGLGYCLEK 220 >gi|300311842|ref|YP_003775934.1| response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 239 Score = 175 bits (444), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 91/218 (41%), Positives = 143/218 (65%), Gaps = 1/218 (0%) Query: 15 MKLLLIEDNPPLAHWLTQILRENKFSVDVASDGEMADHVLHTENYDVVLLDLMLPKMHGK 74 M++LL+ED +A + L +V+ S+G A L +E+YD+++LD+MLP+ G Sbjct: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHASRRL-SESYDLLILDVMLPQQDGF 59 Query: 75 NVLRRLRERHNAVPVMILTASGSIDEKVECLGAGADDYLVKPFEVRELVARIKVLIRRQT 134 ++L++LR R + PV++LTA ++E+V L GADDYLVKPF+ REL ARI+VL+RR Sbjct: 60 SLLQQLRTRGHHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSG 119 Query: 135 PDKAAEIHCGDLSYDSNTRQFAIAGKTLALPAREHDVLEILMLKQGKTVSKNALVNGIFS 194 + +HC +LS D +R + G+ + L RE +LEI+ + G+ +K+ L++ +F+ Sbjct: 120 GESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 Query: 195 LSDEPSADAIEIYISRLRKKLEPSQAAIMTLRGLGYLL 232 + D PSA+++E Y++RLRKKL + I TLRGLGY L Sbjct: 180 VDDNPSANSVEQYVARLRKKLAAAAFEIRTLRGLGYQL 217 >gi|300312680|ref|YP_003776772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 220 Score = 169 bits (427), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 91/222 (40%), Positives = 139/222 (62%), Gaps = 3/222 (1%) Query: 15 MKLLLIEDNPPLAHWLTQILRENKFSVDVASDGEMADHVLHTENYDVVLLDLMLPKMHGK 74 M +LL+ED+P L L+++L + F+V ++G D + N V++LD+ LP + G Sbjct: 1 MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGN--DALSQRFNAAVLVLDIGLPGIDGF 58 Query: 75 NVLRRLRERHNAVPVMILTASGSIDEKVECLGAGADDYLVKPFEVRELVARIKVLIRRQT 134 VLRR+R N PV++LTA +I ++V L GADDYLVKPF ELVARIK LIRR Sbjct: 59 EVLRRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSA 118 Query: 135 PDKAAEIHCGDLSYDSNTRQFAIAGKTLALPAREHDVLEILMLKQGKTVSKNALVNGIFS 194 P + A++ G LS D+ T++ I G+ + L RE VLE LM + VSK +++ + Sbjct: 119 P-QPAQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLP 177 Query: 195 LSDEPSADAIEIYISRLRKKLEPSQAAIMTLRGLGYLLKQKD 236 ++ + +A+E+Y+SR+R K+ S AI T+RG GY+L++ + Sbjct: 178 WGEDFTINAVEVYVSRIRLKIADSGVAIRTIRGFGYMLEKSE 219 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 709,204 Number of extensions: 27531 Number of successful extensions: 229 Number of sequences better than 1.0e-08: 40 Number of HSP's gapped: 208 Number of HSP's successfully gapped: 40 Length of query: 240 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 157 Effective length of database: 1,226,865 Effective search space: 192617805 Effective search space used: 192617805 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)