BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0039.p (465 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase tra... 632 0.0 gi|300313819|ref|YP_003777911.1| two component sensor histidine ... 250 2e-67 gi|300309980|ref|YP_003774072.1| two component transmembrane sen... 191 9e-50 gi|300312679|ref|YP_003776771.1| periplasmic sensor signal trans... 177 1e-45 gi|300314014|ref|YP_003778106.1| two component sensor histidine ... 172 4e-44 >gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 459 Score = 632 bits (1630), Expect = 0.0, Method: Compositional matrix adjust. Identities = 312/443 (70%), Positives = 371/443 (83%), Gaps = 1/443 (0%) Query: 15 IPLTVYVGVSASFTRDSAVTSADLVQDRALLASARMMAGQVTWEDGAPVVNVPPAALEMF 74 IP+ VYVG+S S D+AV+SA LVQDRALLASARM+AGQV W DGAPVV+VPPAALE+F Sbjct: 15 IPMAVYVGLSTSDAYDNAVSSATLVQDRALLASARMIAGQVGWNDGAPVVSVPPAALELF 74 Query: 75 ASPDHDEVYYQVLMDDNTLLAGRPDFPVDVDFSLIAPAYATTYFNNQPLRVVSYVRALYD 134 ASP D VYYQVLMDD+TLLAGRPDFP DF+ + P Y+TT FN +PLRVVSY+RAL+D Sbjct: 75 ASPAQDAVYYQVLMDDDTLLAGRPDFPAAPDFAALYPVYSTTSFNGKPLRVVSYIRALFD 134 Query: 135 NGTLRMVAVSVGQTMRGHAQLLDELWRPALHRQIIMLLLAIALVVVGLTIELRPILRVKD 194 GTLRMVAVSVGQTM+G +++D+ W +L RQI++LLLAI+LVV+GLT+ELRP+L +KD Sbjct: 135 EGTLRMVAVSVGQTMQGRQEMIDDQWHASLRRQIVLLLLAISLVVLGLTMELRPLLALKD 194 Query: 195 ELATREPNSLTPLRAGELQVELRPIVVAINQYIQRLNTQVAVQKRFIADAAHQLRTPLTL 254 ELATR P+SLTPLRAG LQ ELRPIV AINQYI RLN QV VQKRF+ADAAHQLRTPL + Sbjct: 195 ELATRRPDSLTPLRAGGLQQELRPIVEAINQYIFRLNAQVTVQKRFVADAAHQLRTPLAV 254 Query: 255 IDSQIQFARQLNDPQRLPQVLQALQDSSRNMTDLTNKLLQLSQAEASNSTAFPRQPIELV 314 IDSQIQFARQL+DP R+ QVL +LQ+ SR+MTDLTNKLL LSQAEAS+S+AFPR P++L+ Sbjct: 255 IDSQIQFARQLDDPARVAQVLASLQEGSRSMTDLTNKLLLLSQAEASDSSAFPRAPVDLL 314 Query: 315 GLAATVLEELVSLAQRKHIDLGMETAVDEAWAMGSQALFSGMLMNLIDNALRYTPEHGKV 374 ++A VLEEL LA +K IDLG+ET ++ A G++A GMLMNLIDNALRYTPE GKV Sbjct: 315 AVSAMVLEELSGLALKKGIDLGLETTLESAMVNGNEAQLMGMLMNLIDNALRYTPEGGKV 374 Query: 375 TVGVALEDNKEVVITVADNGPGIPAEVRERVFERFYRNAAPDQHGAGLGMAIVKEIVQAA 434 TVG+ + +++ITV+DNGPGIPAEVRERVFERFYRNAAPDQ G+GLG+AIV+EIVQA+ Sbjct: 375 TVGLE-KKRSQMIITVSDNGPGIPAEVRERVFERFYRNAAPDQPGSGLGLAIVREIVQAS 433 Query: 435 QGTITLGTDRDGKGLTVTVRLPA 457 QG+I L G GL TV LPA Sbjct: 434 QGSIRLDAPAQGSGLVATVSLPA 456 >gi|300313819|ref|YP_003777911.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 485 Score = 250 bits (639), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 167/472 (35%), Positives = 259/472 (54%), Gaps = 28/472 (5%) Query: 4 SLRLRLLLWLLIPLTVYVGVSASFTRDSAVTSADLVQDRALLASARMMAGQVTWEDGAPV 63 SLR +L+ WLLIPLT+ V V A +A+ ADL DR+LLAS R +A +V+ DG Sbjct: 10 SLRSQLVRWLLIPLTLLVAVDAVSVYYNALEVADLAYDRSLLASTRALAERVSVVDGHVT 69 Query: 64 VNVPPAALEMFASPDHDEVYYQVLMDDNTLLAGRPDFPV---DVDFSLIAPAYATTY--- 117 +VP AL+ F + + +YY+V + L++G D P DV S + PA Y Sbjct: 70 ADVPYVALDSFETDNLGRIYYKVTGLNGELVSGYDDLPPVPPDVKRSEVYPALVRFYQAD 129 Query: 118 FNNQPLRVVSYVRALYDNGTLRMVAVSVGQTMRGHAQLLDELWRPALHRQIIMLLLAIAL 177 +++QP+R+ + ++ +YD+ + + VG+TM G + ++ L RQ ++ +A L Sbjct: 130 YHDQPVRIAALLQPVYDDSIRGIALIQVGETMEGRNGMTRKILFDTLWRQGTLVTVAALL 189 Query: 178 VVVGLTIELRPILRVKDELATREPNSLTPLRAGELQVELRPIVVAINQYIQRLNTQVAVQ 237 V + LRP++++K E+ +R P L+ + E+RP+V A+N Y+ RL ++ Q Sbjct: 190 VWFAVRFVLRPLMQLKGEVESRAPTDLSGFDTALVHKEMRPLVQAMNGYMGRLQALISAQ 249 Query: 238 KRFIADAAHQLRTPLTLIDSQIQFA-----RQLNDPQRLPQVLQALQDSSRNMTDLTNKL 292 +RFIADA+HQLRTPLT++ +Q + R+ D L +++ + ++ L N+L Sbjct: 250 RRFIADASHQLRTPLTVLKTQSELTLRELRREQVDAAELRDLVEGMARTTDAAVHLANRL 309 Query: 293 LQLSQAEASNSTAFPRQPIELVGLAATVLEELVSLAQRKHIDLGMETAVD---EAWAMGS 349 L L++AE + P+ L A V EL A + I L E D EA A+ Sbjct: 310 LTLARAEHGAAEG-GTMPLSLSDAARQVALELSQQAVSREIGLAFEEEGDVSIEANAL-- 366 Query: 350 QALFSGMLMNLIDNALRYTPEHGKVTVGVALEDNKE----VVITVADNGPGIPAEVRERV 405 L +++NL+DNA+RYTP G VT+ V + + ++ V D+GPGIPA RE+V Sbjct: 367 --LLHELMVNLLDNAIRYTPAGGHVTLRVRAQSSPGQPTVALLEVEDSGPGIPAAEREKV 424 Query: 406 FERFYRNAAPDQH----GAGLGMAIVKEIVQAAQGTITLGTDRDGKGLTVTV 453 FE FYR A QH G GLG++IV+EI + ++TL G GL V + Sbjct: 425 FEPFYR-AGATQHVNPGGTGLGLSIVREIAAMHRASVTLDAPAQGSGLVVRI 475 >gi|300309980|ref|YP_003774072.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 390 Score = 191 bits (486), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 114/310 (36%), Positives = 182/310 (58%), Gaps = 5/310 (1%) Query: 139 RMVAVSVGQTMRGHAQLLDELWRPALHRQIIMLLLAIALVVVGLTIELRPILRVKDELAT 198 R+ V VG+T+ AQL +E+ + + Q I+L +A+ALV L+ L P+ ++ + Sbjct: 51 RLATVQVGETLEKRAQLANEIIKGVILPQFIILPVALALVWFALSRGLSPLSELQQRIRA 110 Query: 199 REPNSLTPLRAGELQVELRPIVVAINQYIQRLNTQVAVQKRFIADAAHQLRTPLTLIDSQ 258 R P+ L+P+ +G++ E+ P+V ++N + RL+ +A+QKRFIADAAHQ++TPL + Q Sbjct: 111 RRPDDLSPIDSGQVPEEISPLVRSLNDMLARLSQTIAIQKRFIADAAHQMKTPLAGMRMQ 170 Query: 259 IQFARQLNDPQRLPQVLQALQDSSRNMTDLTNKLLQLSQAEASNSTAFPRQPIELVGLAA 318 + A + +D + + L+ L SS T L N+LL L++AE S + P+EL LA Sbjct: 171 SELALRQDDQVDVRRSLEQLAKSSETATRLVNQLLSLARAENQQSQSGGMIPVELNELAR 230 Query: 319 TVLEELVSLAQRKHIDLGMETAVDEAWAMGSQALFSGMLMNLIDNALRYTPE--HGKVTV 376 +V+++ V ++ + IDLG E G+ + +L NL+DNAL YTP +G+VTV Sbjct: 231 SVVQDWVPMSFTQRIDLGFEQPDHPILITGNPVMLRELLSNLLDNALHYTPHDGNGRVTV 290 Query: 377 GVALEDNKEV-VITVADNGPGIPAEVRERVFERFYR--NAAPDQHGAGLGMAIVKEIVQA 433 ++ + ++ V DNGPGIP R VFERFYR G GLG+AIV+EI Q Sbjct: 291 RARTDEGGGLAILEVEDNGPGIPVAERANVFERFYRILGTPSTGSGLGLGLAIVREIAQQ 350 Query: 434 AQGTITLGTD 443 + + + ++ Sbjct: 351 HEAALEITSN 360 >gi|300312679|ref|YP_003776771.1| periplasmic sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 459 Score = 177 bits (450), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 140/469 (29%), Positives = 224/469 (47%), Gaps = 28/469 (5%) Query: 1 MIVSLRLRLLLWLLIPLTVYVGVSASFTRDSAVTSADLVQDRALLASARMMAGQVTWEDG 60 M S+R LL WL+ PL + + A T A A D+ L+ S + QV Sbjct: 4 MHSSIRRDLLKWLIAPLLLVNLIGAGLTYWLAWLPAQHAFDQNLMDSTWGLYAQVRHRQE 63 Query: 61 APVVNVPPAALEMFASPDHDEVYYQVLMDDNTLLAGRPDFP-VDVDFSLIAPAYATTYFN 119 + A ++ S D ++ V + ++ G FP + P Sbjct: 64 RTTAELTQQAEQILRSNHSDTTFFAVRNTEGQIVVGDKGFPQLPASDVFDRPINYDGEMR 123 Query: 120 NQPLRVVSYVRALYDNGTLRMVAVSVGQTMRGHAQLLDELWRPALHRQIIMLLL------ 173 +P+R+ + ++ NG ++ V+V +T+R R H I++ L Sbjct: 124 GEPVRIAA-MQVRVKNG---VIWVAVAETIRK---------RDRAHYTILLSFLVLDGAL 170 Query: 174 ---AIALVVVGLTIELRPILRVKDELATREPNSLTPLRAGELQVELRPIVVAINQYIQRL 230 +I +V+V + LRP+ ++ L R+ L + VEL+P++VA+N+ + R+ Sbjct: 171 TFASIFVVLVAVRRGLRPLKSLQRNLEQRDHGKLGAIDGRGAPVELQPLIVAMNELMARI 230 Query: 231 NTQVAVQKRFIADAAHQLRTPLTLIDSQIQFARQLNDPQ-RLPQVLQALQDSSRNMTDLT 289 N Q+ F+AD AHQLRTPLT + Q++ + Q + L + S M + Sbjct: 231 NKGEQAQQNFMADVAHQLRTPLTGLKLQLELLHDKHQDQPDTARSLAMMNSSVERMIRQS 290 Query: 290 NKLLQLSQAEASNSTAFPRQPIELVGLAATVLEELVSLAQRKHIDLGMETAVDEAWAMGS 349 +LL L+++E + + + L L ++ + A +K IDLG + + A G Sbjct: 291 RQLLALARSEPGLFESRKLEELSLDKLVEESVQHFIEEADKKRIDLGFD--LRPARLRGD 348 Query: 350 QALFSGMLMNLIDNALRYTPEHGKVTVGVALEDNKEVVITVADNGPGIPAEVRERVFERF 409 + L S ++ NLIDNA+RY+P HG VTV LE+ V++V D+GPGI E RE +F+RF Sbjct: 349 RFLLSDLIDNLIDNAVRYSPPHGTVTVR-CLEEQDATVLSVEDSGPGIAPEHRELIFDRF 407 Query: 410 YRNAAPDQHGAGLGMAIVKEIVQAAQGTITLGTDRDGKGLTVTVRLPAA 458 YR A G+GLG+AIV+EI G I++ G+G TVR P A Sbjct: 408 YR-ANDKVAGSGLGLAIVREIAHDHGGVISVDCKEQGQGTIFTVRFPLA 455 >gi|300314014|ref|YP_003778106.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 467 Score = 172 bits (437), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 131/468 (27%), Positives = 233/468 (49%), Gaps = 21/468 (4%) Query: 4 SLRLRLLLWLLIPLTVYVGVSASFTRDSAVTSADLVQDRALLASARMMAGQVTWEDGAPV 63 S+R LL W++ P+ +++ + + + + S + DR L+AS + + E+G Sbjct: 10 SVRAYLLAWIISPIALFIIIDSFSLYRNTLESVNTAYDRMLIASVHSIGDLLRIENGELK 69 Query: 64 VNVPPAALEMFASPDHDEVYYQVLMDDNTLLAGRPDFPV---DVDFSLIAPAYATTY--- 117 ++P AALE++ + + Y++ D G D P D I PA A Y Sbjct: 70 ASLPYAALEIYEADYSSRMIYRINGLDGKFFDGDADLPSYKGKADKEAIYPALAHIYEDT 129 Query: 118 FNNQPLRVVSYVRALYDNGTLRMVAVSVGQTMRGHAQLLDELWRPALHRQIIMLLLAIAL 177 +N P+RV + + + N V V +TM + L +++ L RQ +L++ +++ Sbjct: 130 YNGVPVRVAALFQPVVTNDPRGAALVQVAETMENRSALARKIFWETLIRQAALLVVIVSV 189 Query: 178 VVVGLTIELRPILRVKDELATREPNSLTPLRAGELQVELRPIVVAINQYIQRLNTQVAVQ 237 + + L+P+ ++ +L R + L+P+ EL+P + A+NQ + RL + Q Sbjct: 190 TLYVVRRALQPVDALRRQLDERPADDLSPVAPPMAPRELQPFIDALNQLMARLRRLLDHQ 249 Query: 238 KRFIADAAHQLRTPLTLIDSQIQFARQLNDPQRLPQVLQALQDSSRNMTDLTNKLLQLSQ 297 +RF+A+A+HQLRTPL ++ +Q+Q + + P P + Q + + T L N+LL L++ Sbjct: 250 QRFVANASHQLRTPLAVLKTQLQSGLRGDAPA--PVIWQEMSGTVERATTLANQLLSLAK 307 Query: 298 AEASNSTAFPRQPIELVGLAATVLEELVSLAQRKHIDLGMETAVDEAWAMGSQALFSGML 357 E ++ +L LA +L L K +D +E ++ MG + ++ Sbjct: 308 VEQIRGRG-AQEVCDLGMLARETAVDLSPLIAEKDLDFELEA--EKILVMGHPWMIGELI 364 Query: 358 MNLIDNALRYTPEHGKVTVGV-ALEDNKEVVITVADNGPGIPAEVRERVFERFYRNAAPD 416 NL+ NA+R+TP G++ + + A ED E++I D+G GI + E VF+ F N + Sbjct: 365 SNLLHNAIRHTPAQGRLGIRITAREDVAELLIW--DSGEGIDDQAMENVFKAFSSNVS-- 420 Query: 417 QHGAGLGMAIVKEIVQAAQGTITL----GTDRDGKGLTVTVRLPAASG 460 GLG+ I EIV + Q TI+L G D +GL +V + +G Sbjct: 421 -SAGGLGLTICGEIVDSMQATISLRNRVGEDGTIEGLNASVHVRVVAG 467 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.134 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,321,005 Number of extensions: 53400 Number of successful extensions: 317 Number of sequences better than 1.0e-08: 39 Number of HSP's gapped: 264 Number of HSP's successfully gapped: 39 Length of query: 465 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 376 Effective length of database: 1,198,455 Effective search space: 450619080 Effective search space used: 450619080 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)