BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0031.p (178 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311609|ref|YP_003775701.1| sugar ABC transporter ATPase [H... 255 1e-69 gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [H... 112 1e-26 gi|300310367|ref|YP_003774459.1| sugar ABC transporter ATPase [H... 112 2e-26 gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [H... 111 3e-26 gi|300310371|ref|YP_003774463.1| sugar ABC transporter ATPase [H... 108 3e-25 >gi|300311609|ref|YP_003775701.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 522 Score = 255 bits (652), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 120/155 (77%), Positives = 135/155 (87%) Query: 9 LLSLSGIGKTYVEPVLSEVSLELRPGQILALTGENGAGKSTLSKIVCGLVQSTTGAMQLD 68 LL+LSGIGK Y PVL + L+LRPGQ+LALTGENGAGKSTLSKI+CGLV ++ G M LD Sbjct: 13 LLTLSGIGKRYAAPVLDGIDLDLRPGQVLALTGENGAGKSTLSKIICGLVDASAGGMMLD 72 Query: 69 GQPYQPRSRTEAEQLGIRMVMQELNLIPTLSIAENLFLNQLPQRFGWIDKPKLAALAQAQ 128 GQPY P SRT+AE LGIRMVMQELNLIPTLSIAENLFL +LP+RFGWID+ KLA A+AQ Sbjct: 73 GQPYAPASRTQAEGLGIRMVMQELNLIPTLSIAENLFLEKLPRRFGWIDRKKLAEAARAQ 132 Query: 129 MAAVGLTDIDPWTPVGDLGVGHQQMVEIARNLIGS 163 M VGL ++DPWTPVGDLG+GHQQMVEIARNLIGS Sbjct: 133 MEVVGLGELDPWTPVGDLGLGHQQMVEIARNLIGS 167 >gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 506 Score = 112 bits (281), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 67/155 (43%), Positives = 94/155 (60%), Gaps = 3/155 (1%) Query: 8 ALLSLSGIGKTYVE-PVLSEVSLELRPGQILALTGENGAGKSTLSKIVCGLVQSTTGAMQ 66 A+L L+GI K + VL V LE+R G++ AL GENGAGKSTL KI+CG+V+ G ++ Sbjct: 4 AMLQLTGIKKNFGPVTVLRGVDLEVRAGEVHALLGENGAGKSTLMKILCGIVRPDAGEIR 63 Query: 67 LDGQPYQPRSRTEAEQLGIRMVMQELNLIPTLSIAENLFL-NQLPQRFGWIDKPKLAALA 125 +DGQP + S A G+ +V QE +LIP L +N+FL +L R+GW+ + + A Sbjct: 64 IDGQPCRFDSYRAAIAGGVGVVFQEFSLIPYLDAVDNMFLARELRSRWGWLQRAAMRRRA 123 Query: 126 QAQMAAVGLTDIDPWTPVGDLGVGHQQMVEIARNL 160 Q + +G+ I PV L V QQ VEIA+ L Sbjct: 124 QEIIGQLGVA-IPLDVPVCKLSVAQQQFVEIAKAL 157 >gi|300310367|ref|YP_003774459.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 516 Score = 112 bits (279), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 64/153 (41%), Positives = 93/153 (60%), Gaps = 2/153 (1%) Query: 9 LLSLSGIGKTYV-EPVLSEVSLELRPGQILALTGENGAGKSTLSKIVCGLVQSTTGAMQL 67 +L LSGI K + L++V L L PG++ L G+NGAGKSTL K++ G+ + G ++L Sbjct: 12 MLELSGIHKAFAGVKALTDVGLRLFPGEVHTLMGQNGAGKSTLIKVLTGVHEPDGGKIEL 71 Query: 68 DGQPYQPRSRTEAEQLGIRMVMQELNLIPTLSIAENLFLNQLPQRFGWIDKPKLAALAQA 127 DG+ P S EA+ LGI V QE+NL P LS+AEN+F+ + P RFG ID + ++ Sbjct: 72 DGRAIAPASTLEAQALGISTVYQEVNLCPNLSVAENIFVGRYPTRFGRIDWKSVHTQSRQ 131 Query: 128 QMAAVGLTDIDPWTPVGDLGVGHQQMVEIARNL 160 + + + DID P+ + QQMV I+R L Sbjct: 132 LLQQLQI-DIDVAAPLSSYPLAIQQMVAISRAL 163 >gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 520 Score = 111 bits (278), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 65/139 (46%), Positives = 91/139 (65%), Gaps = 3/139 (2%) Query: 24 LSEVSLELRPGQILALTGENGAGKSTLSKIVCGLVQSTTGAMQLDGQPYQPRSRTEAEQL 83 L EL G++ AL GENGAGKSTL KI+ G+ Q +G + LDG+P + +A+ L Sbjct: 38 LDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDSGDILLDGKPVEITEPRQAQAL 97 Query: 84 GIRMVMQELNLIPTLSIAENLFLNQLPQR-FG-WIDKPKLAALAQAQMAAVGLTDIDPWT 141 GI ++ QELNL+ LS A+N+F+ + P++ G +ID+ +L A A A + L D+DP T Sbjct: 98 GIGIIHQELNLMNHLSAAQNIFIGREPRKAMGLFIDEDELNRQAAAIFARMRL-DMDPST 156 Query: 142 PVGDLGVGHQQMVEIARNL 160 PVG+L V QQMVEIA+ L Sbjct: 157 PVGELTVARQQMVEIAKAL 175 >gi|300310371|ref|YP_003774463.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 518 Score = 108 bits (269), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 70/165 (42%), Positives = 99/165 (60%), Gaps = 13/165 (7%) Query: 1 MSNPSSPALLSLSGIGKTYVEP---VLSEVSLELRPGQILALTGENGAGKSTLSKIVCGL 57 MSN +L + GI K++ P L+ V+L +R G+I A+ GENGAGKSTL K++ G+ Sbjct: 1 MSN-----ILEMRGIEKSF--PGVKALNNVNLAVREGEIHAIVGENGAGKSTLMKVLSGV 53 Query: 58 V--QSTTGAMQLDGQPYQPRSRTEAEQLGIRMVMQELNLIPTLSIAENLFLNQLPQRFGW 115 S +G + G+ + ++E LGI ++ QEL L+P LS+ ENLFL R G Sbjct: 54 YPHGSYSGDIVYKGEVRAFKDIRDSEHLGIIIIHQELALVPLLSVMENLFLGNEQARGGV 113 Query: 116 IDKPKLAALAQAQMAAVGLTDIDPWTPVGDLGVGHQQMVEIARNL 160 ID + A+ +A VGL + P T VGDLGVG QQ++EIA+ L Sbjct: 114 IDWEQSYVRAKELLAKVGLKE-SPLTQVGDLGVGKQQLIEIAKAL 157 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.129 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 430,981 Number of extensions: 15358 Number of successful extensions: 288 Number of sequences better than 1.0e-08: 58 Number of HSP's gapped: 283 Number of HSP's successfully gapped: 60 Length of query: 178 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 99 Effective length of database: 1,245,805 Effective search space: 123334695 Effective search space used: 123334695 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 127 (53.5 bits)