BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0022.p
         (564 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312719|ref|YP_003776811.1| oligopeptide ABC transporter pe...   889   0.0  
gi|300310897|ref|YP_003774989.1| dipeptide ABC transporter perip...    68   2e-12

>gi|300312719|ref|YP_003776811.1| oligopeptide ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 609

 Score =  889 bits (2296), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/551 (76%), Positives = 475/551 (86%), Gaps = 2/551 (0%)

Query: 2   RKFTFSTLLLSFAATVGFSGPVLADHAFSLYDTPKYPAGFTHFDYFNPDAPKRGTLYLAN 61
            KF  S LL +  A      P  A+HAFSLYDTP+Y  GF+HFDY NPDAP+RGTLYLAN
Sbjct: 8   HKFLLSCLLATVLAHA--PAPARAEHAFSLYDTPRYGPGFSHFDYVNPDAPRRGTLYLAN 65

Query: 62  PDRRTSFDKFNPFSLKGVAAAGVSTLMFETLAIGSSDEVATMYGLLADDMTLASDRMAMT 121
           PDRRTSFDKFNP S+KGVAAAG+  LMFETLA+ S DEVAT+YGLLADDM LA DRM+MT
Sbjct: 66  PDRRTSFDKFNPMSMKGVAAAGLDQLMFETLAVSSGDEVATVYGLLADDMQLAPDRMSMT 125

Query: 122 FHLNPKARFNNGDPVTAADVKYSYDTLLAKGAPQFKSMFADVKQCVVVDAQTVRFEFKTR 181
           FHLNPKARFNNGD V+AADVKYS+DTL+AKGAPQ+KS+FADVK CVVVDA TVRF+F + 
Sbjct: 126 FHLNPKARFNNGDKVSAADVKYSFDTLMAKGAPQYKSVFADVKACVVVDASTVRFDFASS 185

Query: 182 NHELPLIVGGVPVFSKKWAAGTAFDNIQLTPPITSGPYLIDTYDVGRNITYKRNPAYWGT 241
           NHELPLIV  VPVFS+KWA GT FD IQLTPPI++GPYLI+ YD GR+ITYKRNP YWG 
Sbjct: 186 NHELPLIVASVPVFSRKWAQGTPFDQIQLTPPISTGPYLIERYDTGRSITYKRNPDYWGK 245

Query: 242 DIPTRKGSFNFERIAYRFYKDDVARLEAFKAGEFDVVVEYSAKSWVRNYNGPKFVSGEIV 301
           D+P R+G FNFERI YRFYKDD+ARLEAFKAGEFDVVVEYSAK+W R+Y GP+F  G I+
Sbjct: 246 DVPARRGMFNFERIVYRFYKDDLARLEAFKAGEFDVVVEYSAKNWARSYTGPQFRDGRII 305

Query: 302 KRELKHSNGAGMQGFVMNLRRDQFKDARVRQALGLALDYEWMNRQLFYGQYSRIYSFFNN 361
           K+E KHSNGAGMQGFVMNLRRDQFKD RVRQA+GLALDYEWMNRQLFYGQY+RIYSFFNN
Sbjct: 306 KKEFKHSNGAGMQGFVMNLRRDQFKDVRVRQAIGLALDYEWMNRQLFYGQYTRIYSFFNN 365

Query: 362 STLAATGAPEGDELKLLESIRASGTKIDPAVFGPAPVPPNTNPPGSLRANLLQARELLRQ 421
           S LAATG P+GDEL LL+S++A G KIDPAVFGPAPVPP+TNPP SLRANL QARELL Q
Sbjct: 366 SDLAATGEPQGDELALLKSLQAKGLKIDPAVFGPAPVPPSTNPPSSLRANLRQARELLAQ 425

Query: 422 AGWEYRDGALRNARGEVFAFEILDDQSALSRVISIYVRNLQKLGIRVTQRTADFALVAKR 481
           AGW YRDGA+RNA+G   +FEILDDQS++SRVIS++ RNL+ LGI V QR+AD+ALVAKR
Sbjct: 426 AGWVYRDGAVRNAQGVPLSFEILDDQSSMSRVISVFARNLRTLGIDVVQRSADYALVAKR 485

Query: 482 MDEFDYDMTSIRFPDVSSPGNEMFDMFGSKAADEKGSNNVWGLKDKAVDKLVEALVAAAT 541
           M++FD+DMTSIRFPD SSPGNE+ DMFGS+AADEKGSNN WGLKD  VD+LV+ ++AA T
Sbjct: 486 MEDFDFDMTSIRFPDTSSPGNELLDMFGSRAADEKGSNNAWGLKDPVVDQLVQTVIAADT 545

Query: 542 RKDLVAAARGL 552
           R  L AAAR L
Sbjct: 546 RVKLTAAARAL 556


>gi|300310897|ref|YP_003774989.1| dipeptide ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 528

 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 105/248 (42%), Gaps = 22/248 (8%)

Query: 116 DRMAMTFHLNPKARFNNGDPVTAADVKYSYDTLLAKGAPQFKSMFA----DVKQCVVVDA 171
           D     F L P  ++ +G P TA DV +SY    A+  P   + FA     V+     D 
Sbjct: 83  DPKTWEFKLRPNVKWQDGKPFTADDVIFSYQR--ARAVPGSVATFAGYLRTVESVTAKDP 140

Query: 172 QTVRFEFKTRNHELPLIVGGVPVFSKKWAAGTAFDNIQL-TPPITSGPYLIDTYDVGRNI 230
            T+  +    N +LPL +  V + SK     +  +N       I +GPY   +Y  G  +
Sbjct: 141 LTLVIKTNIPNPDLPLNLASVHIVSKHIGEKSTTENYNSGAAVIGTGPYKFVSYTPGDRV 200

Query: 231 TYKRNPAYWGTDIPTRKGSFNFERIAYRFYKDDVARLEAFKAGEFDVVVEYSAKSWVRNY 290
             +RN  YW        G   +E++ YR+  +  AR  A  +G+ DV+ + S     +  
Sbjct: 201 VMQRNDDYWN-------GKPLWEKVNYRYINNGAARTAALLSGDVDVIDKVSVSDLAKLK 253

Query: 291 NGPK---FVSGEIVKRELKHSNGAGMQGFVMN-----LRRDQFKDARVRQALGLALDYEW 342
             P    +    +    ++ S   G   F+ +     L ++   D RVR+A+ LA++ + 
Sbjct: 254 QSPNVKVYPYNGLRVLLIQPSFHQGPSPFITDNNGKQLDKNPLLDVRVRRAMSLAINRKA 313

Query: 343 MNRQLFYG 350
           +  ++  G
Sbjct: 314 LIDRILQG 321


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,643,102
Number of extensions: 68166
Number of successful extensions: 147
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 2
Length of query: 564
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 474
Effective length of database: 1,193,720
Effective search space: 565823280
Effective search space used: 565823280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)