BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0019.p
         (211 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312723|ref|YP_003776815.1| hypothetical protein Hsero_3427...   230   8e-62

>gi|300312723|ref|YP_003776815.1| hypothetical protein Hsero_3427
           [Herbaspirillum seropedicae SmR1]
          Length = 212

 Score =  230 bits (586), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 122/189 (64%), Positives = 146/189 (77%), Gaps = 7/189 (3%)

Query: 26  CASAP-TRFYTLA---DAAAPTAAAAVSTPTGQTFIEVAPVSVPERLARPQIVVRTDATR 81
           C S P T+FYTLA   DA A TA +A   P  QTFIEV PV+VPERLARPQ+VVR+DATR
Sbjct: 26  CGSTPPTQFYTLAAPTDAGA-TARSAAQGP--QTFIEVMPVAVPERLARPQLVVRSDATR 82

Query: 82  VDILEQDRWSAPFNNELRDALASGVANRLGAVDVTRGGRPNNQPVYRVVVELRQLDAVKG 141
           VD+LEQ+RWS+PFNNELRDALA+GVA RLGA+DV+RGGRP +QP YR+ VELR  DA++ 
Sbjct: 83  VDVLEQERWSSPFNNELRDALAAGVAARLGAIDVSRGGRPADQPSYRINVELRDFDAMRN 142

Query: 142 GKVDATFGWTITRSDNSSSAVCRLSVVEPAAGLGVDGVVQGMQRAVGNAADAIAADVAAL 201
           G+V A+FGWTITRSD+  SA CRL+VVE  AG     VV   Q+AVG A  AIA +V AL
Sbjct: 143 GQVQASFGWTITRSDDRRSAACRLTVVERVAGSANADVVAATQKAVGQAVQAIADNVRAL 202

Query: 202 RSGKTGVCS 210
           ++G+ G CS
Sbjct: 203 QAGQGGQCS 211


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.127    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 514,371
Number of extensions: 20366
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 130
Effective length of database: 1,236,335
Effective search space: 160723550
Effective search space used: 160723550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)