BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0018.p
         (547 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312724|ref|YP_003776816.1| paraquat-inducible B protein [H...   816   0.0  

>gi|300312724|ref|YP_003776816.1| paraquat-inducible B protein
           [Herbaspirillum seropedicae SmR1]
          Length = 542

 Score =  816 bits (2107), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/546 (72%), Positives = 462/546 (84%), Gaps = 6/546 (1%)

Query: 1   MTEPTTSPSQPNRPEPKRERKRNWLPSLVWLIPIVAAVVGLTLVAKILIERGPIITISFV 60
           MT P T   +P   +P+R R+RNWLPSLVWLIPI+AAVVGL+LVAKILI+RGP++T++F 
Sbjct: 1   MTPPDTPEDKPALLQPRRTRQRNWLPSLVWLIPIIAAVVGLSLVAKILIDRGPLVTVTFR 60

Query: 61  SAEGLEAGKTKVKYKDVDIGQVQSITLSKDRSHVVTTVQLTKEAESFTADDTRFWVVRPR 120
           SAEGLEAGKT+VKYKDV+IGQVQ++ L+ DRSHV+  +QL KEA  F A+DTR+WVVRPR
Sbjct: 61  SAEGLEAGKTRVKYKDVEIGQVQTLKLAPDRSHVLVGIQLNKEAAGFDAEDTRYWVVRPR 120

Query: 121 VAASGISGLNTLLSGAYIGADAGKSEETKKEFAGLEQPPIITRDTSGKQFVLHASDLGSV 180
           +AASGISGL TLLSGAYIGAD G SE++KK F GLEQPPI+TRD SG+QFVLH +DLGS+
Sbjct: 121 IAASGISGLGTLLSGAYIGADPGASEQSKKSFVGLEQPPIVTRDASGRQFVLHTNDLGSL 180

Query: 181 DIGSPVFYRRIKVGQVAAYDLDQDGRGVTLRIFVNAPYDKFVGISSRFWHASGFDMQINA 240
           DIGSP+FYRRIKVGQV AYDLD DGRGVTLRIFVNAPYDKFV  +SRFWHASGFDM++NA
Sbjct: 181 DIGSPIFYRRIKVGQVVAYDLDADGRGVTLRIFVNAPYDKFVTQTSRFWHASGFDMELNA 240

Query: 241 SGFKLHTQSLATVVLGGIAFKSIDDLDSQVPAKENTSFRLAEDEAAAMKEPDGRSQTVLL 300
           SGFKLHTQ+LATVVLGGIAF+  D+     PAKE   + L EDE+AAMKEPDG  QT LL
Sbjct: 241 SGFKLHTQALATVVLGGIAFRDRDEDRVSAPAKEGAEYALVEDESAAMKEPDGVPQTALL 300

Query: 301 YFNQSLRGLEPGAVVDFRGVVLGEVKSIGIEYDDKTREFVMPVVVQLYPDRLGRKFNEQQ 360
           YF+QSLRGL+PGA VDFRGVVLGEVKSIG+EYD    EF MPVVVQ+YP+RLGR+F E+ 
Sbjct: 301 YFDQSLRGLQPGATVDFRGVVLGEVKSIGVEYDKARGEFRMPVVVQIYPERLGRRFQEET 360

Query: 361 -ESRYTPRQRLKYLVSRGLRAQLRGXSLRSGSLLTGQVYVALDFFPNAAPTQIDIERTPL 419
            E R +    L+ LV RGLRAQ     LR+G+LLTGQ+YVA+DFFP A P QID ++TPL
Sbjct: 361 GEQRRSNAHLLRTLVKRGLRAQ-----LRNGNLLTGQLYVAIDFFPKAKPAQIDPDKTPL 415

Query: 420 VFPTIPNSLDEIQNQIGDITRKLSKVPFDKIGDDLRKTLTTLNRTLTSAEQTMNKLNNDV 479
             PTIP SLDE+Q Q+ DI  KLSKVPFD+IG DL+ TL TLN+TL++AEQT  ++NND+
Sbjct: 416 ELPTIPGSLDELQQQLSDIAGKLSKVPFDEIGRDLQTTLKTLNKTLSTAEQTAARINNDI 475

Query: 480 APEITAAMRDARKTLSAAERTLSEDAPLQQDVRQTMQELSRAAGSIRVLTDYLQQHPESL 539
           APE+ AAM+DARKTL+AAERTLS+DAPLQQD+RQTMQELS+AA SIR+LTDYLQQHPESL
Sbjct: 476 APEMQAAMKDARKTLNAAERTLSDDAPLQQDIRQTMQELSKAAASIRILTDYLQQHPESL 535

Query: 540 IRGKQE 545
           IRGKQE
Sbjct: 536 IRGKQE 541


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,492,469
Number of extensions: 59577
Number of successful extensions: 255
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 457
Effective length of database: 1,193,720
Effective search space: 545530040
Effective search space used: 545530040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)