BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0017.p
         (246 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312725|ref|YP_003776817.1| uncharacterized paraquat-induci...   338   3e-94
gi|300312726|ref|YP_003776818.1| paraquat-inducible A protein [H...    75   4e-15

>gi|300312725|ref|YP_003776817.1| uncharacterized paraquat-inducible
           A protein [Herbaspirillum seropedicae SmR1]
          Length = 236

 Score =  338 bits (867), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 162/212 (76%), Positives = 181/212 (85%), Gaps = 2/212 (0%)

Query: 29  LDSAIDTDIFPCHHCGTVWQGAQQDEQCGVCHAPLHRRRIDSLNRTWAFLIAACIMYIPA 88
           +  A   D+  CHHCGTVWQ AQ  E+CGVCHAPLH R+IDSL RTWA LIAACIMYIPA
Sbjct: 25  VQQAASLDVIGCHHCGTVWQDAQAGERCGVCHAPLHVRKIDSLTRTWALLIAACIMYIPA 84

Query: 89  NLMPVMITSTLLDEQRDTIMSGIIYFWVSGSWELAIVVFVASFMVPLFKLVALIILTVSA 148
           NLMPVM+T TL DEQRDTI+SG+IYFW SG W LA+VVFVASF+VPLFKLVAL IL  SA
Sbjct: 85  NLMPVMVTRTLFDEQRDTILSGVIYFWTSGEWGLALVVFVASFLVPLFKLVALGILVFSA 144

Query: 149 RRRSSWQRLQRAKLYRVVETIGRWSMLDVFVVSLLTGLVQIEGFAKITAGIGVAAFGSVV 208
           RRRS WQRLQRAKLYR+VE IGRWSMLDVFVVS+LTGLV+I GFA I AGIG+AAFG+VV
Sbjct: 145 RRRSRWQRLQRAKLYRLVEAIGRWSMLDVFVVSVLTGLVKIHGFANIHAGIGIAAFGAVV 204

Query: 209 VLTMLASLSFDPRLIWDEADPEAEQGADKEQQ 240
           VLTMLASL+FDPRLIWD+ADP     A+K+Q+
Sbjct: 205 VLTMLASLAFDPRLIWDDADPTPP--ANKKQE 234


>gi|300312726|ref|YP_003776818.1| paraquat-inducible A protein
           [Herbaspirillum seropedicae SmR1]
          Length = 209

 Score = 75.5 bits (184), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 95/197 (48%), Gaps = 15/197 (7%)

Query: 36  DIFPCHHCGTVWQ----GAQQDEQCGVCHAPLHRRRIDSLNRTWAFLIAACIMYIPANLM 91
           D+  C  C  V+Q    G ++  +C  CHA L R     L       I A I+++ AN+ 
Sbjct: 6   DLIVCEECDAVYQRPTLGQREVARCLRCHAELERDTGRRLEHLLPLTIGALILFVIANVF 65

Query: 92  PVMITSTLLDEQRDTIMSGIIYFWVSGSWELAIVVFVASFMVPLFKLVALIILTVSARRR 151
           P++           T+M  ++     G  E+A++V   + + P+ +L  L+ L +   RR
Sbjct: 66  PIVTIELQGLSADTTLMGAVVALTRDGMSEVALLVLATTLLFPMIQLFVLLYLLMPGSRR 125

Query: 152 SSWQRLQRAK----LYRVVETIGRWSMLDVFVVSLLTGLVQIEGFAKITAGIGVAAFGSV 207
                 QR      L R+++    W M++VF++ +L  L+++   A++  G  + +FG +
Sbjct: 126 ------QRPPGFVLLLRLMQVARPWGMIEVFMLGILVALIKLSNIAEVIPGPALWSFGGL 179

Query: 208 VVLTMLASLSFDPRLIW 224
            VL +   +SF+PR +W
Sbjct: 180 TVL-LTVVVSFNPRYLW 195


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 770,982
Number of extensions: 30498
Number of successful extensions: 123
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 2
Length of query: 246
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 163
Effective length of database: 1,226,865
Effective search space: 199978995
Effective search space used: 199978995
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)