BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0016.p
         (222 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312726|ref|YP_003776818.1| paraquat-inducible A protein [H...   260   7e-71
gi|300312725|ref|YP_003776817.1| uncharacterized paraquat-induci...    69   2e-13

>gi|300312726|ref|YP_003776818.1| paraquat-inducible A protein
           [Herbaspirillum seropedicae SmR1]
          Length = 209

 Score =  260 bits (664), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 138/218 (63%), Positives = 170/218 (77%), Gaps = 12/218 (5%)

Query: 1   MHERPDLIVCEECDAVHRRPVLAHAEVARCLRCGAELERDTGSHVARLLPLTVASLIMFV 60
           M +RPDLIVCEECDAV++RP L   EVARCLRC AELERDTG  +  LLPLT+ +LI+FV
Sbjct: 1   MQKRPDLIVCEECDAVYQRPTLGQREVARCLRCHAELERDTGRRLEHLLPLTIGALILFV 60

Query: 61  IANSFPIVQIELQGLTSETTLFGAVMVLNGEGMSLVAMLVLSTTILFPLVQMLVLLYLLL 120
           IAN FPIV IELQGL+++TTL GAV+ L  +GMS VA+LVL+TT+LFP++Q+ VLLYLL+
Sbjct: 61  IANVFPIVTIELQGLSADTTLMGAVVALTRDGMSEVALLVLATTLLFPMIQLFVLLYLLM 120

Query: 121 PSAHVVNDADDMHGAHDGRRPGVKLLLRLMQIVRPWGMVEVFLLGVLVALVKLSNMAAVV 180
           P            G+   R PG  LLLRLMQ+ RPWGM+EVF+LG+LVAL+KLSN+A V+
Sbjct: 121 P------------GSRRQRPPGFVLLLRLMQVARPWGMIEVFMLGILVALIKLSNIAEVI 168

Query: 181 PGVALWAFGALTILLTVVVSFNPRYLWRILVSERRNPE 218
           PG ALW+FG LT+LLTVVVSFNPRYLW +    + + E
Sbjct: 169 PGPALWSFGGLTVLLTVVVSFNPRYLWHLWEQHQGSGE 206


>gi|300312725|ref|YP_003776817.1| uncharacterized paraquat-inducible
           A protein [Herbaspirillum seropedicae SmR1]
          Length = 236

 Score = 69.3 bits (168), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 94/203 (46%), Gaps = 15/203 (7%)

Query: 6   DLIVCEECDAVHRRPVLAHAEVARCLRCGAELERDTGSHVARLLPLTVASLIMFVIANSF 65
           D+I C  C  V +          RC  C A L       + R   L +A+ IM++ AN  
Sbjct: 32  DVIGCHHCGTVWQDAQAGE----RCGVCHAPLHVRKIDSLTRTWALLIAACIMYIPANLM 87

Query: 66  PIVQIELQGLTSETTLFGAVMVLNGEGMSLVAMLVLSTTILFPLVQMLVLLYLLLPSAHV 125
           P++           T+   V+     G   +A++V   + L PL + LV L +L+ SA  
Sbjct: 88  PVMVTRTLFDEQRDTILSGVIYFWTSGEWGLALVVFVASFLVPLFK-LVALGILVFSARR 146

Query: 126 VNDADDMHGAHDGRRPGVKLLLRLMQIVRPWGMVEVFLLGVLVALVKLSNMAAVVPGVAL 185
            +    +  A          L RL++ +  W M++VF++ VL  LVK+   A +  G+ +
Sbjct: 147 RSRWQRLQRAK---------LYRLVEAIGRWSMLDVFVVSVLTGLVKIHGFANIHAGIGI 197

Query: 186 WAFGALTIL-LTVVVSFNPRYLW 207
            AFGA+ +L +   ++F+PR +W
Sbjct: 198 AAFGAVVVLTMLASLAFDPRLIW 220


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.141    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 620,885
Number of extensions: 21549
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 2
Length of query: 222
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 140
Effective length of database: 1,231,600
Effective search space: 172424000
Effective search space used: 172424000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)