BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0011.p
         (362 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312731|ref|YP_003776823.1| hypothetical protein Hsero_3435...   505   e-144

>gi|300312731|ref|YP_003776823.1| hypothetical protein Hsero_3435
           [Herbaspirillum seropedicae SmR1]
          Length = 457

 Score =  505 bits (1300), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 250/383 (65%), Positives = 287/383 (74%), Gaps = 25/383 (6%)

Query: 1   MPDASPVKWHLAHTSWFFETFILESYEPDFAPFHPAFRVLFNSYYEGVGDKHPRPQRGML 60
           MPDASPVKWHLAHT+WFFETF+LE +E  F PFHP FR+LFNSYYEGVG++ PRPQRGML
Sbjct: 75  MPDASPVKWHLAHTTWFFETFLLERFESGFKPFHPQFRMLFNSYYEGVGERFPRPQRGML 134

Query: 61  TRPSLAEIRAYRANIDLRMQALLLSDVCDDNC--------------------LRLLELGM 100
           TRP+LAE+ AYR  +D RM  LLL D  D N                     L LLELGM
Sbjct: 135 TRPALAEVLAYREQVDQRM--LLLIDALDANGASTSAVAAGGGDAQPQLAQFLSLLELGM 192

Query: 101 QHEQQHQELILTDIKHLLSLNPLKPAY--LPRALQAM-PVQTELEWNTFDAGVVEIGYCD 157
           QHEQQHQEL+LTDIK LLSLNPL+PAY  LP ++    P +  L+W+  +AGVVEIG+  
Sbjct: 193 QHEQQHQELMLTDIKMLLSLNPLQPAYQPLPESVPLDDPAELALQWHRIEAGVVEIGHAG 252

Query: 158 GGFCFDNELPSHRQFVEAFAIGSRLISNIEYLMFVEQGGYENPAHWLSAGWDWRSSNRIT 217
            GFCFDNE P HRQFVEA+   SRL++N EYL F++ GGY++P+ WL+ GWDW+    + 
Sbjct: 253 PGFCFDNETPRHRQFVEAYQCASRLVNNAEYLDFIQAGGYQDPSLWLAEGWDWKEQLALR 312

Query: 218 HPLYWQRQDDGAWREFTLHGMLPLDPHAAVLHLSYYEADAFARWAGARLPTEAEWEHAAG 277
           HPLYW+R   G W EFT +G+  L PH A +HLSYYEADA+ARWAGARL TEAEWEHAA 
Sbjct: 313 HPLYWRRDAQGQWSEFTEYGVQALQPHRAAVHLSYYEADAYARWAGARLLTEAEWEHAAA 372

Query: 278 ELGNEGRQFFGTAWQWTSSSYAPYPGYAIPEGAVGEYNGKFMVNQYVLRGSSGATPLGHS 337
            L   GR+FFG AWQWTSSSYAPYPG+    GAVGEYNGKFMVNQYVLRGSS ATPL H+
Sbjct: 373 HLQGGGREFFGVAWQWTSSSYAPYPGFVAAAGAVGEYNGKFMVNQYVLRGSSSATPLNHA 432

Query: 338 RTSYRNFFPATACWQYSGIRLAR 360
           R SYRNFFPATA WQ SGIRLAR
Sbjct: 433 RLSYRNFFPATARWQVSGIRLAR 455


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,343,166
Number of extensions: 61699
Number of successful extensions: 120
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 276
Effective length of database: 1,212,660
Effective search space: 334694160
Effective search space used: 334694160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)