BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0010.p
         (322 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312732|ref|YP_003776824.1| hypothetical protein Hsero_3436...   414   e-117

>gi|300312732|ref|YP_003776824.1| hypothetical protein Hsero_3436
           [Herbaspirillum seropedicae SmR1]
          Length = 322

 Score =  414 bits (1065), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 206/311 (66%), Positives = 239/311 (76%), Gaps = 1/311 (0%)

Query: 11  DDWSEPCPIRNELQDGLMAAAASISPKYFYDALGSTLFEAICALPEYYPTRTEAQIFDLH 70
           D  SE    R EL  GL A AA ISPKYFYD LGS LFEAICALPEYYPTRTEA IF  H
Sbjct: 12  DSLSEDRQRRAELVTGLTAPAAFISPKYFYDVLGSKLFEAICALPEYYPTRTEAAIFAEH 71

Query: 71  ADDIAATVGKGVTMIDLGAGNCAKAARLFPSLQPRQYVPIDISTEFLREAVNGLRQKFPA 130
            D+IAA VG+   +IDLGAGNCAKAA LF +L+PRQYVP+DIS +FL+++V GL+++FP 
Sbjct: 72  RDEIAAAVGQDACLIDLGAGNCAKAASLFAALRPRQYVPVDISAQFLQQSVAGLQRRFPD 131

Query: 131 IPMQEIAMDFSASLQLPSTVGRENRLFFYPGSSLGNFAPEEALQFLRRMRHGLQLGEGGG 190
           IPM  + MDFS++L LP+ V RE RLFFYPGSSLGNF  +EAL FLRR+R  L     GG
Sbjct: 132 IPMLPLGMDFSSTLALPAQVQRERRLFFYPGSSLGNFDRDEALVFLRRLRAALP-DAAGG 190

Query: 191 VLLGIDLVKEKAVLDAAYDDALGVTAAFNRNALLHVNRLLGSDFVVGDWQHRGFFNPALS 250
           VLLG+DLVK  AVL+AAYDDALGVTAAFN NAL H+N LLG+DF   DW+H  F++ A  
Sbjct: 191 VLLGLDLVKPSAVLEAAYDDALGVTAAFNLNALNHINGLLGADFNARDWRHLAFYDEAQQ 250

Query: 251 RIEMHLEARRDLTVTWCGGERKFSQGERIHTENSYKFTPDGFSDLLRQAGFGQAKMWFDP 310
           R+EMHLEARRDL V W GG R F QGERIHTENS+KF  D  +DLL QAGFG  +MW DP
Sbjct: 251 RVEMHLEARRDLIVRWPGGRRTFRQGERIHTENSHKFRADEIADLLAQAGFGDCQMWCDP 310

Query: 311 QKWFMLCYARP 321
           Q+WF +C+ARP
Sbjct: 311 QRWFAVCHARP 321


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.139    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,003,232
Number of extensions: 40854
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 237
Effective length of database: 1,217,395
Effective search space: 288522615
Effective search space used: 288522615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)