BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0008.p (501 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPas... 827 0.0 gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclol... 282 4e-77 gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPas... 276 2e-75 gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC trans... 271 1e-73 gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPas... 267 1e-72 >gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 614 Score = 827 bits (2136), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/500 (86%), Positives = 464/500 (92%) Query: 1 MVSWLGERVTADLRSAVYAHVVTQSPQFFETTKTGEVLSRLTTDTTLIQTLVGTSISMAL 60 MVSWLGERVTADLRSAVYAHVVTQSP+FFETTKTGEVLSRLTTDTTLIQTLVGTSISMAL Sbjct: 114 MVSWLGERVTADLRSAVYAHVVTQSPEFFETTKTGEVLSRLTTDTTLIQTLVGTSISMAL 173 Query: 61 RNGLLFIGGMVMLFITSVKLSSIIIVMLAAVVLPIVFYGRRVRKLSRESQDRVADASALA 120 RN LLFIGGM MLF TS +L+SIIIVMLAAVVLPIVFYGRRVRKLSR SQDRVADASA+A Sbjct: 174 RNALLFIGGMSMLFFTSARLTSIIIVMLAAVVLPIVFYGRRVRKLSRASQDRVADASAMA 233 Query: 121 GEILNAMPTVQAFTHEEIEAKRFGTSVERAFHTAMQRIRARSVLTMMAILLVFGAIVFVL 180 GEILNAMPTVQAFTHEEIEA+RF SVERAF TAM+R+RARS+LT++AILLVFGAIVFVL Sbjct: 234 GEILNAMPTVQAFTHEEIEARRFAQSVERAFGTAMERVRARSLLTVVAILLVFGAIVFVL 293 Query: 181 WLGAHAVVQGTMSGGQLGQFILYASLVAGSIGALSEVLGDTQRAAGATERLLDLLAAQSP 240 WLGAHAV++G+MSGG+LGQFILYASLVAGS+GALSEV+GDTQRAAGATERLLDLLAA SP Sbjct: 294 WLGAHAVMEGSMSGGELGQFILYASLVAGSLGALSEVMGDTQRAAGATERLLDLLAAHSP 353 Query: 241 VQSVLLPETLPPRTANGAALQLDDVVFHYPSRPDSNALMHLSLDIKPGETIAVVGPSGAG 300 VQSVLLPE LPPRTANGAAL + V FHYPSRP +L LSL ++PGET+A+VGPSGAG Sbjct: 354 VQSVLLPEKLPPRTANGAALTVQGVDFHYPSRPGHPSLTQLSLTVQPGETVAIVGPSGAG 413 Query: 301 KTTLFQLLLRFYDPQHGKITLDGVDIRFLTLPALRNAIGIVPQDTVIFSENALENIRFGR 360 KTTLFQLLLRFYDPQ G+I LDGVDIR+L L ALR AIGIVPQDTVIFS NA+ENIRFGR Sbjct: 414 KTTLFQLLLRFYDPQQGQILLDGVDIRYLDLQALRGAIGIVPQDTVIFSANAMENIRFGR 473 Query: 361 ADASDEEVIAAARMAAAHEFIERLPQGYQSFLGERGVRLSGGQRQRIAIARALLKNPPLL 420 +ASD EVIAAA+MAAAHEFIERLP Y FLGERGVRLSGGQRQRIAIARALLKNPPLL Sbjct: 474 PEASDAEVIAAAQMAAAHEFIERLPGSYACFLGERGVRLSGGQRQRIAIARALLKNPPLL 533 Query: 421 LLDEATSALDAESERLVQVALEAAMVGRTTLVIAHRLATVQRADRIVVVEHGRIVETGTH 480 LLDEATSALDAESERLVQ ALEAAMVGRTTLVIAHRLATVQRADRI+V+EHGRIVE+GTH Sbjct: 534 LLDEATSALDAESERLVQGALEAAMVGRTTLVIAHRLATVQRADRIIVLEHGRIVESGTH 593 Query: 481 TELIARNGLYASLAALQFNT 500 EL+AR+GLYA LAALQF T Sbjct: 594 AELVARDGLYAGLAALQFQT 613 >gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclolysin-type) secretion ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 726 Score = 282 bits (722), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 182/496 (36%), Positives = 286/496 (57%), Gaps = 18/496 (3%) Query: 8 RVTADLRSAVYAHVVTQSPQFFETTKTGEVLSRLTTDTTLIQTLVGTSISMALRNGLLFI 67 ++ +L S +++H+++ +F+ + G+ ++R+ + L G ++++ L F+ Sbjct: 231 KIDVELGSRLFSHLLSLPLSYFQVRRAGDSIARVRELENIRSFLTGNAMTLVLDIMFSFV 290 Query: 68 GGMVMLFITSVKLSSIIIVMLAAVVLPIVFYGRRVRKLSRESQDRVADASALAGEILNAM 127 VML+ SV LS I++ + VL + + +R+ + ++ A+ + E L M Sbjct: 291 FLGVMLWY-SVSLSLIVLASIPVYVLLSLVFTPLLRERLNDKFNKSAENQSFLVETLTGM 349 Query: 128 PTVQAFTHE----EIEAKRFGTSVERAFHTAMQRIRARSVLTMMAILLVFGAIVFVLWLG 183 TV+A E + K+ V T + A + +++ L+ G ++WLG Sbjct: 350 DTVKAMAVEPRWQQKWDKQLAAYVAAGLTTTNISLLASGAVGLVSKLVTVG----IMWLG 405 Query: 184 AHAVVQGTMSGGQLGQFILYASLVAGSIGALSEVLGDTQRAAGATERLLDLLAAQSPVQS 243 A VV+ MS G+L F + A VA I L+++ D Q+ + RL D+L A++ V Sbjct: 406 ALLVVKNEMSVGELVAFNMLAGQVASPILRLAQLWNDFQQIGISMSRLADVLDARTEVAG 465 Query: 244 VLLPETLPPRTANGAALQLDDVVFHYPSRPDSNALMH-LSLDIKPGETIAVVGPSGAGKT 302 T PR NGA + D V F Y RP++ ++ LSL I+PGE I +VG SG+GK+ Sbjct: 466 ---NRTRLPRV-NGA-ISFDLVSFRY--RPETPEVIRGLSLQIRPGEVIGIVGRSGSGKS 518 Query: 303 TLFQLLLRFYDPQHGKITLDGVDIRFLTLPALRNAIGIVPQDTVIFSENALENIRFGRAD 362 TL +L+ R Y + G+I++DG DI + +LR IG+V Q+ +FS + +NI Sbjct: 519 TLAKLVQRLYICETGRISVDGQDIAIIDTASLRQQIGVVLQENTLFSRSIRDNIALADPS 578 Query: 363 ASDEEVIAAARMAAAHEFIERLPQGYQSFLGERGVRLSGGQRQRIAIARALLKNPPLLLL 422 E++I AA++A AH+FI LP+GY + +GE+G LSGGQRQRIAIARAL+ NP +L+ Sbjct: 579 TPIEQIIEAAKLAGAHDFICELPEGYDTMVGEQGSGLSGGQRQRIAIARALITNPGILIF 638 Query: 423 DEATSALDAESERLVQVALEAAMVGRTTLVIAHRLATVQRADRIVVVEHGRIVETGTHTE 482 DEATSALD ESE+++Q + GRT L+IAHRL+ V+ ADRI+V+E GR+ E+G+H E Sbjct: 639 DEATSALDYESEKIIQDNMRQICAGRTVLIIAHRLSAVRDADRIIVMERGRVAESGSHDE 698 Query: 483 LIA-RNGLYASLAALQ 497 LI G+YA L LQ Sbjct: 699 LIDLPGGIYAHLHRLQ 714 >gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 758 Score = 276 bits (706), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 189/506 (37%), Positives = 290/506 (57%), Gaps = 32/506 (6%) Query: 5 LGERVTADLRSAVYAHVVTQSPQFFETTKTGEVLSRLTTDTTLIQTLVGTSISMALRNGL 64 + ER+ ADLR+ Y+H++ S ++F +TG++++R+ ++T I + + L Sbjct: 253 VSERIGADLRTTTYSHLLRLSQEYFGGKRTGDLMARIGSETDRICVFLSLHL-------L 305 Query: 65 LFIGGMVMLFITSVKLSSIIIVMLAAVVLPIVFYGRR---VRKLSR---ESQDRV-ADAS 117 F ++M+ +T+ L SI + +LP+ F VR R E DR+ ++ + Sbjct: 306 DFAIDVLMIIMTAAILISINPWLALVTLLPLPFIAWMIHVVRDRLRHGFEKIDRIWSEVT 365 Query: 118 ALAGEILNAMPTVQAFTHEEIEAKRFGTSVERAFHTAMQRIRARSVLTMMAILLVFGAIV 177 + + + + V+AF E+ E RF E H M R + ++ + F V Sbjct: 366 NVLADTIPGIRVVKAFAQEKREVARFR---EANRHNLMVNDRVNKIWSLFTPTVTFLTEV 422 Query: 178 --FVLW-LGAHAVVQGTMSGGQLGQFILYASLVAGSIGALSEVLGDTQRAAGATERLLDL 234 V+W G V ++ G L F+ Y S + ++S ++ TQ+AA +R+ D+ Sbjct: 423 GLLVVWVFGIWQVSSNQITVGVLTAFLAYISRFYTRLDSMSRIVSVTQKAAAGAKRIFDI 482 Query: 235 LAAQSPVQSVLLPETLPP---RTANGAALQLDDVVFHYPSRPDSNALMHLSLDIKPGETI 291 L S V PE P GA +++ ++ F Y +R + ++SL I PGE I Sbjct: 483 LDHVSSV-----PEPANPVHLEKVQGA-IEVRNIGFRYGNRA---VIRNMSLSIAPGEMI 533 Query: 292 AVVGPSGAGKTTLFQLLLRFYDPQHGKITLDGVDIRFLTLPALRNAIGIVPQDTVIFSEN 351 +VG SG+GK+T+ L+ RFYD G I +DGVDIR L + R IG+V Q+ +F Sbjct: 534 GLVGHSGSGKSTMVNLICRFYDVSEGAIRIDGVDIRSLPISEYRRNIGLVLQEPFLFFGT 593 Query: 352 ALENIRFGRADASDEEVIAAARMAAAHEFIERLPQGYQSFLGERGVRLSGGQRQRIAIAR 411 ENI +G+ +A+ EE+IAAAR A AHEFI RLPQGY S +GERG LSGG+RQRI+IAR Sbjct: 594 IAENIAYGKPEATREEIIAAARAAHAHEFILRLPQGYDSLVGERGQALSGGERQRISIAR 653 Query: 412 ALLKNPPLLLLDEATSALDAESERLVQVALEAAMVGRTTLVIAHRLATVQRADRIVVVEH 471 ALL +P +L+LDEATS++D +E+ +Q AL+ + GRTT+ IAHRL+T+++ADR+VV++ Sbjct: 654 ALLIDPRILILDEATSSVDTTTEKEIQKALDNLVQGRTTIAIAHRLSTLRKADRLVVLDR 713 Query: 472 GRIVETGTHTELIARNGLYASLAALQ 497 G++VE G H EL+AR G Y L Q Sbjct: 714 GQVVEVGNHEELMAREGHYYKLYQAQ 739 >gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC transporter permease/ATPase [Herbaspirillum seropedicae SmR1] Length = 634 Score = 271 bits (692), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 176/490 (35%), Positives = 270/490 (55%), Gaps = 30/490 (6%) Query: 17 VYAHVVTQSPQFFETTKTGEVLSRLTTDTTLIQTLVGTSISMALRNGLLFIGGMVMLFIT 76 V+ H+ S +F +TG + + T + +LV ++ ++ L+ I ++ IT Sbjct: 121 VFRHLHALSLRFHLNRQTGGMTRDIERGTRGVSSLVSYTL-FSILPTLIEIALVLAYLIT 179 Query: 77 SVKLSSIIIVMLAAVVLPIVF----------YGRRVRKLSRESQDRVADASALAGEILNA 126 + +I A+V I+F + R + +L + R D+ +LN Sbjct: 180 HYDVWFSVITA-GALVCYILFTITVTEWRTHFRRTMNELDSHANTRAIDS------LLN- 231 Query: 127 MPTVQAFTHEEIEAKRFGTSVERAFHTAMQRIRARSVLTMMAILLVFGAIVFVLWLGAHA 186 TV+ F +EE EA+R+ ++R A++ + S+L ++ A+ +LW Sbjct: 232 YETVKYFGNEEFEARRYDEGLQRYERAAVKSQSSLSLLNTGQSAIIAIAVTLILWRATVG 291 Query: 187 VVQGTMSGGQL---GQFILYASLVAGSIGALSEVLGDTQRAAGATERLLDLLAAQSPVQS 243 V+ G+M+ G + F++ + +G L + +++ ERL LL V Sbjct: 292 VIDGSMTLGDMVLVNAFMIQLYIPLNFLGVLYR---EIKQSLADMERLFSLLEEHREVAD 348 Query: 244 VLLPETLPPRTANGAALQLDDVVFHYPSRPDSNALMHLSLDIKPGETIAVVGPSGAGKTT 303 P GA L D V F Y + L + ++ G T AVVG SG+GK+T Sbjct: 349 ---SADAKPLKTQGANLHFDHVDFSYER--NRQILFDVDFTVQAGTTTAVVGHSGSGKST 403 Query: 304 LFQLLLRFYDPQHGKITLDGVDIRFLTLPALRNAIGIVPQDTVIFSENALENIRFGRADA 363 L +LL RFYD G I +DG D+R +T +LR AIGIVPQDTV+F++ NI +G+ A Sbjct: 404 LSRLLYRFYDVDAGAIRIDGQDLRTVTQASLRQAIGIVPQDTVLFNDTIEYNIAYGKPGA 463 Query: 364 SDEEVIAAARMAAAHEFIERLPQGYQSFLGERGVRLSGGQRQRIAIARALLKNPPLLLLD 423 + E+++AAA+ A H+FIE LP GY S +GERG++LSGG++QR+AIAR LLK+P +L+ D Sbjct: 464 TREQIVAAAKAAYIHDFIESLPDGYASMVGERGLKLSGGEKQRVAIARTLLKDPAILIFD 523 Query: 424 EATSALDAESERLVQVALEAAMVGRTTLVIAHRLATVQRADRIVVVEHGRIVETGTHTEL 483 EATSALD+ +E+ +Q LE RTTLVIAHRL+T+ A +I+V++HGRIVE GTH L Sbjct: 524 EATSALDSRAEQAIQQQLEEIARERTTLVIAHRLSTIVNAQQILVLDHGRIVERGTHAGL 583 Query: 484 IARNGLYASL 493 + GLYA + Sbjct: 584 LMAGGLYAQM 593 >gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 578 Score = 267 bits (683), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 184/501 (36%), Positives = 279/501 (55%), Gaps = 10/501 (1%) Query: 1 MVSWLGERVTADLRSAVYAHVVTQSPQFFETTKTGEVLSRLTTDTTLIQTLVGTSISMAL 60 M++W+ R+ +LR ++A ++ F+ T G+V++ + + I +V + L Sbjct: 81 MMTWVSTRILNELRRQMFARMLDLPLHFYATNTVGKVINSMMFEVQQIIDMVTKVFTSIL 140 Query: 61 RNGLLFIGGMVMLFITSVKLSSIIIVMLAAVVLPIVFYGRRVRKLSRESQDRVADASALA 120 R+ L +G + L + L+ + +V+L V L + G+R++KL+R+S A+ + + Sbjct: 141 RSALTVLGLLAWLLYLNWVLTIVTLVLLPLVTLVVRTTGKRLKKLNRDSLAVNAEMTQVI 200 Query: 121 GEILNAMPTVQAFTHEEIEAKRFGTSVERAFHTAMQRIRARSVLTMMAILLVFGAIVFVL 180 E A ++ F ++ E +RF E M+ A S + L+ A+ V+ Sbjct: 201 EETTRAQQVIKIFGGQDYEKERFNRRAENLRSYTMRMTAAFSSTVPITQLMTATAVAVVI 260 Query: 181 WLGAHAVVQGTMSGGQLGQFILYASLVAGSIGALSEVLGDTQRAAGATERLLDLLAAQSP 240 + G ++ G FI ++ + L+E+ G QR A E + L+ Sbjct: 261 VMALIQSGNGQITVGGFVSFITAMLMLLTPLKQLAEINGPLQRGMAAAEEVYKLI---DK 317 Query: 241 VQSVLLPETLPPRTANGAALQLD--DVVFHYPSRPDSNALMHLSLDIKPGETIAVVGPSG 298 + E L R A QLD +V F YP + AL +++L ++ GETIA VG SG Sbjct: 318 TTERITGEALAGR----ATGQLDFVEVGFAYPGH-EQLALKNINLHVEAGETIAFVGMSG 372 Query: 299 AGKTTLFQLLLRFYDPQHGKITLDGVDIRFLTLPALRNAIGIVPQDTVIFSENALENIRF 358 GK+TL L+ FY G+I LDG DI ++LP+LR I +V Q+TV+F + NI + Sbjct: 373 GGKSTLVSLIPGFYSCSSGEIRLDGRDIETISLPSLRQQIAMVNQNTVLFDDTLAANIAY 432 Query: 359 GRADASDEEVIAAARMAAAHEFIERLPQGYQSFLGERGVRLSGGQRQRIAIARALLKNPP 418 G A+ V AA A + + LP+G Q+ LG+ G RLSGGQRQR+AIARA+ K+ P Sbjct: 433 GDANPDPARVEAAVEAAHLTDVVAGLPEGLQTRLGDNGSRLSGGQRQRVAIARAIYKDAP 492 Query: 419 LLLLDEATSALDAESERLVQVALEAAMVGRTTLVIAHRLATVQRADRIVVVEHGRIVETG 478 +L+LDEATSALD ESER VQ AL+ M GRTT VIAHRL+T++RADRIVV+ HG+I E G Sbjct: 493 ILILDEATSALDTESERAVQAALDRLMQGRTTFVIAHRLSTIERADRIVVLAHGQIAEIG 552 Query: 479 THTELIARNGLYASLAALQFN 499 TH L+ + G+YA+L LQF+ Sbjct: 553 THQALLEQEGVYANLYRLQFS 573 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,407,126 Number of extensions: 55335 Number of successful extensions: 630 Number of sequences better than 1.0e-08: 125 Number of HSP's gapped: 487 Number of HSP's successfully gapped: 134 Length of query: 501 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 412 Effective length of database: 1,198,455 Effective search space: 493763460 Effective search space used: 493763460 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)