BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0006.p (127 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310772|ref|YP_003774864.1| NAD-dependent aldehyde dehydrog... 215 9e-58 gi|300313231|ref|YP_003777323.1| NAD-dependent aldehyde dehydrog... 106 8e-25 gi|300310410|ref|YP_003774502.1| NADP-dependent succinate-semial... 103 5e-24 gi|300312371|ref|YP_003776463.1| methylmalonate-semialdehyde deh... 78 2e-16 gi|300311569|ref|YP_003775661.1| NAD-dependent aldehyde dehydrog... 69 1e-13 >gi|300310772|ref|YP_003774864.1| NAD-dependent aldehyde dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 477 Score = 215 bits (547), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 103/127 (81%), Positives = 115/127 (90%) Query: 1 MYKDVQLFIDGRWTASVSDRTIAVVNPATEEVIGHIAHANKQDLDAALASAQKGFDTWRK 60 MYKDVQLFI+G WTAS S RTI V+NPATEEVIG IAHA++ DLD AL +A KGF+TWR Sbjct: 1 MYKDVQLFINGEWTASASGRTIDVINPATEEVIGKIAHADRADLDRALEAASKGFETWRN 60 Query: 61 VSAFERSKIMRKAANILRERADEVALLMTLEQGKPLAEAKAETLGAADTIDWFAEEARRT 120 +SAFERSKIMR+AA++LRERA+EVA LMT+EQGKPLAEAK ETLGAADTIDWFAEEARRT Sbjct: 61 MSAFERSKIMRRAADLLRERAEEVARLMTMEQGKPLAEAKMETLGAADTIDWFAEEARRT 120 Query: 121 YGRLVPA 127 YGRLVPA Sbjct: 121 YGRLVPA 127 >gi|300313231|ref|YP_003777323.1| NAD-dependent aldehyde dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 480 Score = 106 bits (264), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 59/125 (47%), Positives = 85/125 (68%) Query: 1 MYKDVQLFIDGRWTASVSDRTIAVVNPATEEVIGHIAHANKQDLDAALASAQKGFDTWRK 60 MY D+QL+IDGR+ R V +PAT +V+G + A + D++ A+ +A + F WR+ Sbjct: 1 MYPDLQLYIDGRFHGVEGRRYQEVRDPATGDVLGRLPWAERADIEEAIQAAHRAFQQWRQ 60 Query: 61 VSAFERSKIMRKAANILRERADEVALLMTLEQGKPLAEAKAETLGAADTIDWFAEEARRT 120 VS ERS I+R+AA + RERA +A +T++ GKPLA+A AE + AA+ +DW AEE RR Sbjct: 61 VSPLERSDILRRAAALARERAQAMAPAITMDNGKPLADAVAEIINAAEHLDWHAEEGRRL 120 Query: 121 YGRLV 125 YGR+V Sbjct: 121 YGRVV 125 >gi|300310410|ref|YP_003774502.1| NADP-dependent succinate-semialdehyde dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 484 Score = 103 bits (256), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 50/122 (40%), Positives = 76/122 (62%) Query: 6 QLFIDGRWTASVSDRTIAVVNPATEEVIGHIAHANKQDLDAALASAQKGFDTWRKVSAFE 65 Q F++G+W + +AV NPA E++GH+ + A+ +A + W+K +A E Sbjct: 13 QAFVNGQWCDADQGERLAVHNPANGELLGHVPLMGAAETRRAIEAANAAWPAWKKKTAKE 72 Query: 66 RSKIMRKAANILRERADEVALLMTLEQGKPLAEAKAETLGAADTIDWFAEEARRTYGRLV 125 RS I+R+ ++ D++AL+MT EQGKPLAEA+ E AA I+WFAEE +RTYG + Sbjct: 73 RSAILRRWYELMLANTDDLALIMTAEQGKPLAEARGEIGYAASFIEWFAEEGKRTYGDTI 132 Query: 126 PA 127 P+ Sbjct: 133 PS 134 >gi|300312371|ref|YP_003776463.1| methylmalonate-semialdehyde dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 506 Score = 78.2 bits (191), Expect = 2e-16, Method: Composition-based stats. Identities = 39/108 (36%), Positives = 65/108 (60%) Query: 4 DVQLFIDGRWTASVSDRTIAVVNPATEEVIGHIAHANKQDLDAALASAQKGFDTWRKVSA 63 +V L+++G S S V+NPAT+EV+ + A K+++D A+A+A++ F TWR S Sbjct: 8 NVPLYLNGEKVQSTSKEWRDVLNPATQEVVARVPFATKEEVDRAVANAKETFKTWRNTSL 67 Query: 64 FERSKIMRKAANILRERADEVALLMTLEQGKPLAEAKAETLGAADTID 111 +R +IM K +LRE +A L+T E GK L +A+ E + + ++ Sbjct: 68 AQRMRIMLKFQQLLRENIAPLAELITREHGKTLPDAEGEVMRGLEVVE 115 >gi|300311569|ref|YP_003775661.1| NAD-dependent aldehyde dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 477 Score = 68.9 bits (167), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 69/122 (56%), Gaps = 1/122 (0%) Query: 6 QLFIDGRWTASVSDRTIAVVNPATEEVIGHIAHANKQDLDAALASAQKGFD-TWRKVSAF 64 Q FI RW A S +I V++P+ + IA N D+D A+ +A+ ++ W ++SA Sbjct: 3 QHFIANRWVAPTSGESIPVLDPSDGQPFDAIARGNATDIDQAVRAARLAYEGAWGRLSAA 62 Query: 65 ERSKIMRKAANILRERADEVALLMTLEQGKPLAEAKAETLGAADTIDWFAEEARRTYGRL 124 ERS+++ K A L++ +E+A L + GKP+ +A+A+ +++A A + +G Sbjct: 63 ERSRLLMKLAYKLQDHQEELAQLEGRDCGKPMKQARADAAAIVRYFEFYAGAADKLHGDT 122 Query: 125 VP 126 +P Sbjct: 123 IP 124 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.129 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 369,982 Number of extensions: 12464 Number of successful extensions: 63 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 63 Number of HSP's successfully gapped: 13 Length of query: 127 Length of database: 1,619,870 Length adjustment: 75 Effective length of query: 52 Effective length of database: 1,264,745 Effective search space: 65766740 Effective search space used: 65766740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)