BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0004.p
         (193 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310769|ref|YP_003774861.1| DNA-3-methyladenine glycosylase...   317   3e-88

>gi|300310769|ref|YP_003774861.1| DNA-3-methyladenine glycosylase I
           [Herbaspirillum seropedicae SmR1]
          Length = 189

 Score =  317 bits (813), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 144/186 (77%), Positives = 167/186 (89%)

Query: 2   SVQRCAWVNLANPRYVTYHDEEWGVPCHDETRLFEMLNLEGAQAGLSWETVLNKRETYRA 61
           ++ RC WVNLANPRY+ YHD EWGVPCHDETRLFEMLNLEGAQAGLSWETVLNKRE+YRA
Sbjct: 4   TLTRCGWVNLANPRYIDYHDHEWGVPCHDETRLFEMLNLEGAQAGLSWETVLNKRESYRA 63

Query: 62  AFDQWNPEKIARYTDAKVAKLLADPGIVRNRLKVAATITNAQSYLRLRDEVGGLDPFLWA 121
           AFD W+ EKIARY + KVA+LLADPGIVRNRLKVAATI NA++YL+LR+E+GGLD +LWA
Sbjct: 64  AFDGWDAEKIARYDERKVAQLLADPGIVRNRLKVAATIGNARAYLKLREEIGGLDAYLWA 123

Query: 122 YVDGKPIRNKWKDLSDAPAKTALSDQVSKDLLKRGFKFVGSTIIYAYLQGIGIIDDHVVD 181
           +VDG+ I N+W  L++ PAKT LSD +SKDL +RGFKFVGSTIIYAYLQG+G+I+DHV D
Sbjct: 124 HVDGQAIVNRWASLAECPAKTPLSDAISKDLARRGFKFVGSTIIYAYLQGVGVINDHVQD 183

Query: 182 CHCHGR 187
           CHCHGR
Sbjct: 184 CHCHGR 189


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 628,096
Number of extensions: 24302
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 113
Effective length of database: 1,241,070
Effective search space: 140240910
Effective search space used: 140240910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)