BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0030.p
         (179 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309949|ref|YP_003774041.1| heat shock protein 24 (HSP-70 c...   244   3e-66

>gi|300309949|ref|YP_003774041.1| heat shock protein 24 (HSP-70
           cofactor)protein [Herbaspirillum seropedicae SmR1]
          Length = 189

 Score =  244 bits (623), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 117/135 (86%), Positives = 129/135 (95%)

Query: 45  QDAFLRAKAEAENIRRRAQDDISRAHKFAIEGFAESLLSVKDSLEMALKIETPSVESLKE 104
           QDAFLRA+AE ENIRRRAQ+DI++AHKFAIEGFAESLL+VKDSLEMALKIE  S+ESLKE
Sbjct: 55  QDAFLRARAEGENIRRRAQEDIAKAHKFAIEGFAESLLAVKDSLEMALKIENASLESLKE 114

Query: 105 GVDMTLKQLSAAFEKNKLLEISPEAGEKLDPMKHQAISAVPAEQEANTVVTVLQKGYTIS 164
           GVDMTLKQLS+AFEKNKL E++P+AG+KLDPMKHQA+SAVPAEQEANTVV VLQKGY IS
Sbjct: 115 GVDMTLKQLSSAFEKNKLQEVNPQAGDKLDPMKHQAVSAVPAEQEANTVVAVLQKGYMIS 174

Query: 165 ERLLRPALVTVAQGK 179
           ERLLRPALVTVAQGK
Sbjct: 175 ERLLRPALVTVAQGK 189


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.308    0.123    0.310 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 437,917
Number of extensions: 14254
Number of successful extensions: 52
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 100
Effective length of database: 1,245,805
Effective search space: 124580500
Effective search space used: 124580500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 127 (53.5 bits)