BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0029.p
         (285 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309948|ref|YP_003774040.1| ferrochelatase [Herbaspirillum ...   437   e-124

>gi|300309948|ref|YP_003774040.1| ferrochelatase [Herbaspirillum
           seropedicae SmR1]
          Length = 369

 Score =  437 bits (1125), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 200/262 (76%), Positives = 231/262 (88%)

Query: 24  HRVHVTHAMRYGSPAVSDVLDELKAQGCDRILVLPAYPQYSGTTTASIFDAVFQHFAKVR 83
           H++ V HAMRYGSP++  VLD+LK QGC RILVLPAYPQYSGTTTASIFDAVF H+ KVR
Sbjct: 108 HQLQVVHAMRYGSPSLPQVLDQLKQQGCTRILVLPAYPQYSGTTTASIFDAVFDHYRKVR 167

Query: 84  NVPELRLIKHYHDHDGYIQALKRSVQTHWDANGQPDKLVMSFHGVPKRTLLLGDPYHCEC 143
           N+PELRLI++YHD DGYIQAL++SV  HW+ NG+PDKLVMSFHGVPKRTL LGDPYHCEC
Sbjct: 168 NIPELRLIRNYHDQDGYIQALRQSVLDHWEVNGRPDKLVMSFHGVPKRTLELGDPYHCEC 227

Query: 144 YKTARLLAEALGLSEAEYVVTFQSRFGKAEWLQPYTAPTLQELARQGVQRVDVMCPGFTS 203
           YKTARLLA++LGL++ +Y+VTFQSRFGKAEWLQPYTAPT+Q L RQGV+R+DVMCPGFTS
Sbjct: 228 YKTARLLAQSLGLNDEQYLVTFQSRFGKAEWLQPYTAPTVQALGRQGVRRIDVMCPGFTS 287

Query: 204 DCLETLEEIAMEAKAEFLHAGGREFHFIPCLNDAPAWGQGMMEIAEQHLIGWPTFAGAAQ 263
           DCLETLEEIAME K EFLHAGG+EFHFIPCLN++PAW  GM+EI EQHL GWPT + AA 
Sbjct: 288 DCLETLEEIAMEVKDEFLHAGGKEFHFIPCLNESPAWIAGMVEIVEQHLAGWPTMSNAAA 347

Query: 264 REEEQKQAAISAEQARRHGATQ 285
           RE+  + AAISAE+A+  GA Q
Sbjct: 348 REQMAQDAAISAERAKALGAPQ 369


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 857,595
Number of extensions: 32645
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 201
Effective length of database: 1,222,130
Effective search space: 245648130
Effective search space used: 245648130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)