BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0028.p
         (254 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309948|ref|YP_003774040.1| ferrochelatase [Herbaspirillum ...   427   e-121

>gi|300309948|ref|YP_003774040.1| ferrochelatase [Herbaspirillum
           seropedicae SmR1]
          Length = 369

 Score =  427 bits (1099), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 196/254 (77%), Positives = 225/254 (88%)

Query: 1   MRYGSPAVSDVLDELKAQGCDRILVLPAYPQYSGTTTASIFDAVFQHFAKVRNVPELRLI 60
           MRYGSP++  VLD+LK QGC RILVLPAYPQYSGTTTASIFDAVF H+ KVRN+PELRLI
Sbjct: 116 MRYGSPSLPQVLDQLKQQGCTRILVLPAYPQYSGTTTASIFDAVFDHYRKVRNIPELRLI 175

Query: 61  KHYHDHDGYIQALKRSVQTHWDANGQPDKLVMSFHGVPKRTLLLGDPYHCECYKTARLLA 120
           ++YHD DGYIQAL++SV  HW+ NG+PDKLVMSFHGVPKRTL LGDPYHCECYKTARLLA
Sbjct: 176 RNYHDQDGYIQALRQSVLDHWEVNGRPDKLVMSFHGVPKRTLELGDPYHCECYKTARLLA 235

Query: 121 EALGLSEAEYVVTFQSRFGKAEWLQPYTAPTLQELARQGVQRVDVMCPGFTSDCLETLEE 180
           ++LGL++ +Y+VTFQSRFGKAEWLQPYTAPT+Q L RQGV+R+DVMCPGFTSDCLETLEE
Sbjct: 236 QSLGLNDEQYLVTFQSRFGKAEWLQPYTAPTVQALGRQGVRRIDVMCPGFTSDCLETLEE 295

Query: 181 IAMEAKAEFLHAGGREFHFIPCLNDAPAWGQGMMEIAEQHLIGWPTFAGAAQREEEQKQA 240
           IAME K EFLHAGG+EFHFIPCLN++PAW  GM+EI EQHL GWPT + AA RE+  + A
Sbjct: 296 IAMEVKDEFLHAGGKEFHFIPCLNESPAWIAGMVEIVEQHLAGWPTMSNAAAREQMAQDA 355

Query: 241 AISAEQARRHGATQ 254
           AISAE+A+  GA Q
Sbjct: 356 AISAERAKALGAPQ 369


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 755,490
Number of extensions: 27619
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 171
Effective length of database: 1,226,865
Effective search space: 209793915
Effective search space used: 209793915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)