BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0027.p
         (548 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309947|ref|YP_003774039.1| DNA repair protein [Herbaspiril...   907   0.0  

>gi|300309947|ref|YP_003774039.1| DNA repair protein [Herbaspirillum
           seropedicae SmR1]
          Length = 548

 Score =  907 bits (2344), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/547 (84%), Positives = 501/547 (91%)

Query: 1   MLRTLSIRDFVIVDAIELEFAPGFSVFTGETGAGKSILIDALALALGGRGDASVVREGAA 60
           MLRTL+IRDFVIVDAIELEFA GFSVFTGETGAGKSILIDALALALGGRGD SVVREGAA
Sbjct: 1   MLRTLTIRDFVIVDAIELEFARGFSVFTGETGAGKSILIDALALALGGRGDPSVVREGAA 60

Query: 61  KADITADFSAGPYVAAWLEAHEFFDEDGGVLLRRVIDNAGRSKAFINGIAATATQLRELG 120
           KAD++ADFSA P V AWLE HEF DE GGVLLRRVIDNAGRSKA+ING AATA QLRE+G
Sbjct: 61  KADVSADFSATPEVQAWLEEHEFADEHGGVLLRRVIDNAGRSKAYINGSAATAAQLREVG 120

Query: 121 ELLVDIHGQHAHQSLLKSDAQRQLLDSQAGLLEEAKAVAAAYKTWRALAKQREEFEVNAK 180
           E+LVDIHGQHAHQSL+K+DAQRQLLDSQAGLLE+A+ VAA+YKTWRALA+QRE+FE +A+
Sbjct: 121 EMLVDIHGQHAHQSLMKADAQRQLLDSQAGLLEQAREVAASYKTWRALARQREQFEQDAR 180

Query: 181 NVLLERERLEWQVSELEKLAVKPGEWSDISNEHSRLSHAASLIDGAQEALSAISESDSPI 240
           NVLLERERLEWQV+EL KLAVKPGEW++IS EHSRLSHAA+LI GAQEAL  ISES+SPI
Sbjct: 181 NVLLERERLEWQVAELHKLAVKPGEWAEISTEHSRLSHAAALISGAQEALGVISESESPI 240

Query: 241 LSQLSSLTQKLGKLTDVDAALKPVMEALEPAQIQLQEAVYALNDYLGRVELDPARLKLVE 300
           LSQLSS+TQKL KL DVD ALKPV++ALEPAQIQLQEAVYALNDYLGRVELDPARL+ VE
Sbjct: 241 LSQLSSITQKLTKLVDVDTALKPVLDALEPAQIQLQEAVYALNDYLGRVELDPARLQEVE 300

Query: 301 GRLEAIHSTARKFRVAPDDLPQEHAKLAEELKQLADASDLDALRAQEAKLQAAYTGAAQK 360
            RLEAIHSTARKF V PD+LP+E+ KL+E+LKQLADASDLDALRAQE KL+ AY   AQK
Sbjct: 301 ERLEAIHSTARKFHVQPDELPEEYRKLSEQLKQLADASDLDALRAQEDKLRQAYLALAQK 360

Query: 361 LSKGRIKAAKALGEAVTAAMQDLSMSGGRFAIALEACEPAAYGVEQVEFLVAGHAGVAPR 420
           LSK R KAA ALGEAVTAAMQDLSM+GGRF IAL   EPAAYG+EQVEFLVAGHAGVAPR
Sbjct: 361 LSKARAKAAAALGEAVTAAMQDLSMAGGRFEIALNEVEPAAYGLEQVEFLVAGHAGVAPR 420

Query: 421 PLAKVASGGELARIALAISVIASSSTATPTLIFDEVDSGIGGGVAEVVGRLLKRLGQDRQ 480
            LAKVASGGELARI+LAISVIAS++T+ PTLIFDEVDSGIGG VAEVVGRLLKRLGQDRQ
Sbjct: 421 ALAKVASGGELARISLAISVIASAATSIPTLIFDEVDSGIGGAVAEVVGRLLKRLGQDRQ 480

Query: 481 VLCVTHLPQVASQGNQHFQVSKRNEAGKTVSQIEALDVKSRVEEIARMLGGLEITATTRK 540
           VLCVTHLPQVASQ NQH+QV KR+E GKT+S I+ LD K+RVEEIARMLGGLEITATTRK
Sbjct: 481 VLCVTHLPQVASQANQHYQVKKRSEGGKTLSDIDGLDAKARVEEIARMLGGLEITATTRK 540

Query: 541 HARELLA 547
           HARELLA
Sbjct: 541 HARELLA 547


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.130    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,520,836
Number of extensions: 58278
Number of successful extensions: 343
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 342
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 458
Effective length of database: 1,193,720
Effective search space: 546723760
Effective search space used: 546723760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)