BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0023.p
         (299 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309944|ref|YP_003774036.1| heat-inducible transcription re...   515   e-147

>gi|300309944|ref|YP_003774036.1| heat-inducible transcription
           repressor transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 342

 Score =  515 bits (1327), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 257/297 (86%), Positives = 278/297 (93%), Gaps = 5/297 (1%)

Query: 1   MADLEEMGFVASPHTSAGRIPTPRGYRVFVDTLLTIESMDAIDEATLETKLQSRSQIN-S 59
           MADLEEMGFVASPHTSAGR+PTPRGYR+FVDTLLT+E   AIDE+ LE +LQ+R Q + S
Sbjct: 47  MADLEEMGFVASPHTSAGRVPTPRGYRMFVDTLLTVE---AIDESALEGRLQARLQHSTS 103

Query: 60  PQKIISNAAQVLSSLSQFAGVVMTPKRESIFKQIEFLRLSEKRILLVIVGPGGDVQNRLL 119
           PQKII+NAAQVLSSLSQFAGVVMTPKRES+F+QIEFLRLSEKRILLVIV  GGDVQNR+L
Sbjct: 104 PQKIITNAAQVLSSLSQFAGVVMTPKRESVFQQIEFLRLSEKRILLVIVDQGGDVQNRML 163

Query: 120 LTEVDYTPSQLVQAANYINQHYGGLGFDEVRLRLQNELRQLRDDMTSLMQAAVEAGSDAM 179
           LTEVDYTPSQL QAANYINQHY G  FD+VR+ LQ ELRQLRDDMT+LMQAAVEAGSDAM
Sbjct: 164 LTEVDYTPSQLTQAANYINQHYAGQSFDQVRMHLQGELRQLRDDMTALMQAAVEAGSDAM 223

Query: 180 ADESD-NVVISGERNLLSVSDLSSNMTSLRKLFDMFEQKTSLMQLLDVSSKATGVQIFIG 238
           ++E+D NVVISGERNLLSV+DLSSNM SLR+LFDMFEQKT L+QLLDVSSKATGVQIFIG
Sbjct: 224 SEEADNNVVISGERNLLSVTDLSSNMNSLRRLFDMFEQKTGLLQLLDVSSKATGVQIFIG 283

Query: 239 GESQLVPMDDMSIVTAPYEVNGKIVGTLGVIGPTRMAYERVIPIVDITAKLLSSALS 295
           GESQLVPMDDMSIVTAPYEVNG+IVGTLGVIGPTRMAYERVIPIVDITAKLLSSALS
Sbjct: 284 GESQLVPMDDMSIVTAPYEVNGRIVGTLGVIGPTRMAYERVIPIVDITAKLLSSALS 340


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.132    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 774,845
Number of extensions: 27683
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 214
Effective length of database: 1,217,395
Effective search space: 260522530
Effective search space used: 260522530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)