BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0021.p
         (170 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309942|ref|YP_003774034.1| small protein A [Herbaspirillum...   199   8e-53

>gi|300309942|ref|YP_003774034.1| small protein A [Herbaspirillum
           seropedicae SmR1]
          Length = 181

 Score =  199 bits (507), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 91/130 (70%), Positives = 112/130 (86%), Gaps = 1/130 (0%)

Query: 38  GVQVSKKS-SLFGFLKPYRIDIQQGNFVSKEMVAQLKPGMTRDQVRFVLGTPLLADVFHS 96
           GV+VS KS SLFGFL+PYRIDIQQGNFVS+EMVAQL+PG+TRDQVRFVLGTPLL D+FH+
Sbjct: 44  GVKVSGKSNSLFGFLRPYRIDIQQGNFVSREMVAQLRPGLTRDQVRFVLGTPLLTDMFHT 103

Query: 97  DRWDYEFRLAKGNGELMSSRVSVFFKDNLMERYEGGSDLPTEQEYLSLIAGSKKGAMPEL 156
           +RWDY+FRLAKGNGE+M+SRV+VFFKD+L++  +GG DLPTE EYL+LI  +K G+  +L
Sbjct: 104 NRWDYDFRLAKGNGEIMTSRVTVFFKDDLLDHVQGGQDLPTESEYLTLITDAKVGSKAKL 163

Query: 157 SDTPTNTAPP 166
           +D     A P
Sbjct: 164 TDDDVKPASP 173


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.131    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 490,168
Number of extensions: 18097
Number of successful extensions: 45
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 91
Effective length of database: 1,245,805
Effective search space: 113368255
Effective search space used: 113368255
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 127 (53.5 bits)