BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0020.p
         (272 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309941|ref|YP_003774033.1| dihydrodipicolinate reductase [...   444   e-126

>gi|300309941|ref|YP_003774033.1| dihydrodipicolinate reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 268

 Score =  444 bits (1141), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 221/272 (81%), Positives = 241/272 (88%), Gaps = 4/272 (1%)

Query: 1   MSALKIAVAGASGRMGRMLIEAIRNADDMVLAGALDVPGSPSIGTDAASFLGKPANVAIE 60
           M+ L IAVAGASGRMGRMLIEAI NADD+ LAGALD P SPSIGTDA  FLGK   V IE
Sbjct: 1   MTVLNIAVAGASGRMGRMLIEAILNADDLQLAGALDTPTSPSIGTDAGLFLGKATGVLIE 60

Query: 61  SDLAKGLANADFLIDFTRPEGTLRHAEYCAAHGVARGVKMIIGTTGLEQEAKDAIATAAQ 120
           SDLA+GLA AD LIDFTRPEGTL+H EYCAAHGV    K++IGTTG E E K AIA  A+
Sbjct: 61  SDLARGLAKADVLIDFTRPEGTLKHLEYCAAHGV----KVVIGTTGFEPEGKAAIAAYAE 116

Query: 121 KTAIMLAPNMSIGVNVTLKLLELAAKSFSHGYDIEIIEAHHRHKVDAPSGTALKMGEVIA 180
           KTAIM APNMS+GVNVT+KLLE+AAK+FSHGYDIEIIEAHHR KVDAPSGTALKMGEVIA
Sbjct: 117 KTAIMAAPNMSVGVNVTMKLLEMAAKNFSHGYDIEIIEAHHRFKVDAPSGTALKMGEVIA 176

Query: 181 DAIGVKLDDVAVYAREGITGERDPSSIGFSAIRGGDIVGDHTVLFAGIGERIEITHKSSS 240
           DA+G KLDDVAVYAREG+TGERDPSSIGF+ +RGGDI+GDHTVLFAGIGERIEI+HKSSS
Sbjct: 177 DALGKKLDDVAVYAREGVTGERDPSSIGFATVRGGDIIGDHTVLFAGIGERIEISHKSSS 236

Query: 241 RVTYAHGSLRAARFLADKKTGLYDMQDVLGLK 272
           RV+YA GSLRAAR+LADK+TGLYDMQDVLG K
Sbjct: 237 RVSYAMGSLRAARYLADKETGLYDMQDVLGFK 268


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 857,220
Number of extensions: 37085
Number of successful extensions: 137
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 188
Effective length of database: 1,222,130
Effective search space: 229760440
Effective search space used: 229760440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)