BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0015.p
         (154 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC trans...   153   6e-39
gi|300311547|ref|YP_003775639.1| ABC transporter ATPase [Herbasp...    64   6e-12

>gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 361

 Score =  153 bits (387), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 76/144 (52%), Positives = 102/144 (70%), Gaps = 6/144 (4%)

Query: 1   VMERGKIAQIGTPQDIYYRPASEFVADFIGTMNRVSGVTRVGHLQIPGGIVPLANANGAA 60
           VMERGKI+QIGTPQ+IYY PA++FVA+FIG MNRV G+     LQ+P G +PL       
Sbjct: 214 VMERGKISQIGTPQEIYYHPANDFVAEFIGAMNRVDGIVAGDRLQLPTGTLPL-----PP 268

Query: 61  NGAADQLATAMFRPEDVEIVPLDTAGAEMF-GDVMSTFFMGDRTRLLVDIGADMPVIVET 119
           +  A Q A A+FRPEDVE++ +  A A    G +++TFF+GDRTR  ++IGA+ PVI ET
Sbjct: 269 DAVAGQPAQALFRPEDVEVIDITEADAHCLRGKLINTFFLGDRTRFEIEIGAERPVIAET 328

Query: 120 RRRGVWHAGERIGLRVPEHAVMQL 143
            RRG W AG++I +RVP  A++ +
Sbjct: 329 SRRGWWEAGQQIAIRVPATALVTM 352


>gi|300311547|ref|YP_003775639.1| ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 359

 Score = 63.9 bits (154), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 4/105 (3%)

Query: 1   VMERGKIAQIGTPQDIYYRPASEFVADFIGTMNRVSGVTRVGHLQIPGGIVPLANANGAA 60
           VM+ G+I Q GTP+ IY RPA+ FVADFIG  N +   TR+   Q+  G + L      +
Sbjct: 213 VMQHGRIEQFGTPEQIYRRPATPFVADFIGQANWLP-FTRLSGSQVAVGGLHLEIQPDES 271

Query: 61  NGAADQLATAMFRPEDVEIVPLDTAGAEMFGDVMSTFFMGDRTRL 105
           + A+ +L     RPE V++   ++        V+   ++GDR RL
Sbjct: 272 DRASGRL---FCRPEAVQLFSDESCANRFLARVVDRIYLGDRYRL 313


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.139    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 475,132
Number of extensions: 18877
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 3
Length of query: 154
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 77
Effective length of database: 1,255,275
Effective search space: 96656175
Effective search space used: 96656175
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)