BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0014.p (210 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC trans... 265 1e-72 gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC trans... 138 4e-34 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 135 3e-33 gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC trans... 132 3e-32 gi|300311547|ref|YP_003775639.1| ABC transporter ATPase [Herbasp... 129 1e-31 >gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 265 bits (678), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 123/151 (81%), Positives = 141/151 (93%) Query: 2 NSSLSIRLLQCAKTFGSGAPALEPIDLEIHPGETLVLLGPSGCGKTTTLRLIAGLEFPDD 61 ++SIRL QCAK+F +G AL+P+DL+IHPGETLVLLGPSGCGKTTTLR+IAGLEFPD+ Sbjct: 5 QEAVSIRLSQCAKSFANGTRALQPLDLQIHPGETLVLLGPSGCGKTTTLRMIAGLEFPDE 64 Query: 62 GGRVLFGDDDVTDLPIEKRGVGMVFQNYALFPNMTVGENIAYGLKIRKMAAAERAERIDT 121 GGRVLFG++DVT LPIEKRGVGMVFQNYALFPNM+VGENIAYG+KIRK+AA ERAER++ Sbjct: 65 GGRVLFGEEDVTMLPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIAAGERAERVER 124 Query: 122 LLDMVHLQGLGHRRIDQLSGGQKQRVALARA 152 LL+MVHLQGL HRR+DQLSGGQKQRVALARA Sbjct: 125 LLEMVHLQGLSHRRVDQLSGGQKQRVALARA 155 >gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 376 Score = 138 bits (347), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 71/154 (46%), Positives = 95/154 (61%), Gaps = 1/154 (0%) Query: 2 NSSLSIRLLQCAKTFGSGAPALEPIDLEIHPGETLVLLGPSGCGKTTTLRLIAGLEFPDD 61 S + ++ KT+ ++ +DL+I GE L LLGPSG GKTT L ++AG EFP Sbjct: 17 QSDVLVQFCGVKKTYDGENLIVKNLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFPT- 75 Query: 62 GGRVLFGDDDVTDLPIEKRGVGMVFQNYALFPNMTVGENIAYGLKIRKMAAAERAERIDT 121 GG + + +P KR +GMVFQNYALFP+MT+ +N+AY L +RKM A R ++ Sbjct: 76 GGEIRLDGQLLNRVPPHKRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREAKVKQ 135 Query: 122 LLDMVHLQGLGHRRIDQLSGGQKQRVALARAWRW 155 LDMV + G R QLSGGQ+QRVALAR + Sbjct: 136 ALDMVQMGKFGDRYPTQLSGGQQQRVALARTLVF 169 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 135 bits (339), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 72/150 (48%), Positives = 102/150 (68%), Gaps = 4/150 (2%) Query: 6 SIRLLQCAKTFGSGAPALEPI---DLEIHPGETLVLLGPSGCGKTTTLRLIAGLEFPDDG 62 +I L Q KT+G+G A++ I D EI GE +V++GPSGCGK+T LR++AGLE Sbjct: 3 AIHLKQVRKTYGAGTKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLE-EISS 61 Query: 63 GRVLFGDDDVTDLPIEKRGVGMVFQNYALFPNMTVGENIAYGLKIRKMAAAERAERIDTL 122 G+++ GD V DL ++R + MVFQNYAL+P+MTV +N+AYGLKI+ ++ +E R+ Sbjct: 62 GQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQRA 121 Query: 123 LDMVHLQGLGHRRIDQLSGGQKQRVALARA 152 ++ L L R QLSGGQ+QRVA+ RA Sbjct: 122 AAILELGALLERTPRQLSGGQRQRVAMGRA 151 >gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 362 Score = 132 bits (331), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 71/149 (47%), Positives = 99/149 (66%), Gaps = 8/149 (5%) Query: 16 FGSGA---PALEPIDLEIHPGETLVLLGPSGCGKTTTLRLIAGLEFP-----DDGGRVLF 67 +G+GA P L+ + +E+ GE + LLGPSG GKTT LR +AGLE P D G R +F Sbjct: 13 YGTGAHANPILKGVSMELQRGEVVALLGPSGSGKTTLLRAVAGLESPKAGAIDIGKRRVF 72 Query: 68 GDDDVTDLPIEKRGVGMVFQNYALFPNMTVGENIAYGLKIRKMAAAERAERIDTLLDMVH 127 ++P E+R +G+VFQ+YAL+P+ TV +N+AYGLK+RK + E A R+ +L + Sbjct: 73 DGARNFEMPAEERNLGLVFQSYALWPHKTVADNVAYGLKLRKTPSGEIATRVKAVLSQLG 132 Query: 128 LQGLGHRRIDQLSGGQKQRVALARAWRWS 156 L LG R QLSGGQ+QRVA+ARA ++ Sbjct: 133 LGHLGERYPHQLSGGQQQRVAIARALVYN 161 >gi|300311547|ref|YP_003775639.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 129 bits (325), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 74/147 (50%), Positives = 99/147 (67%), Gaps = 6/147 (4%) Query: 5 LSIRLLQCAKTFGSGAPALEPIDLEIHPGETLVLLGPSGCGKTTTLRLIAGLEFPDDGGR 64 LS+R + K FGS AL+ + LE+ GE + LLGPSGCGKTT LR IAGLE D GR Sbjct: 13 LSVR--EVEKRFGSFT-ALDRVSLEVRRGEMVCLLGPSGCGKTTLLRTIAGLE-RQDSGR 68 Query: 65 VLFGDDDVTDLPIEKRGVGMVFQNYALFPNMTVGENIAYGLKIRKMAAAERAERIDTLLD 124 + D++ LP + R G++FQ+YALFPN++V +N+AYGL +M+ ++ ER+ +L Sbjct: 69 LHADGRDISQLPPQARDYGILFQSYALFPNLSVADNVAYGLG--RMSRQQKRERVTEMLS 126 Query: 125 MVHLQGLGHRRIDQLSGGQKQRVALAR 151 MV L G + QLSGGQ+QRVALAR Sbjct: 127 MVGLDGSQDKYPGQLSGGQQQRVALAR 153 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.134 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 585,579 Number of extensions: 24903 Number of successful extensions: 443 Number of sequences better than 1.0e-08: 118 Number of HSP's gapped: 303 Number of HSP's successfully gapped: 120 Length of query: 210 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 129 Effective length of database: 1,236,335 Effective search space: 159487215 Effective search space used: 159487215 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)