BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0013.p
         (163 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309935|ref|YP_003774027.1| spermidine/putrescine ABC trans...   285   2e-78

>gi|300309935|ref|YP_003774027.1| spermidine/putrescine ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 267

 Score =  285 bits (728), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 143/163 (87%), Positives = 150/163 (92%)

Query: 1   MMPVAVPGLATSLALIMAYGQYRAFRGSLLFILVGHVLFTLPFMVRPVLAVMQSSQLAVL 60
           MMPVAVPGLAT+LALIMAYGQYR FR SL FILVGHV+FTLPFMVRPVLAVMQSSQLA L
Sbjct: 105 MMPVAVPGLATALALIMAYGQYREFRASLWFILVGHVIFTLPFMVRPVLAVMQSSQLAQL 164

Query: 61  EEAAASLGAGMRQRFFGVVIPNAASGILAGALMVVTLSIGEFNITWMLHTPLTMTLPVGL 120
           EEAAASLGAG  +RFFG+VIPNAASGILAGALMVVTLSIGEFNITWMLHTPLT TLPVGL
Sbjct: 165 EEAAASLGAGRMRRFFGIVIPNAASGILAGALMVVTLSIGEFNITWMLHTPLTQTLPVGL 224

Query: 121 ADAYASMRLEVGSAYTLIFLLMIVPLLVAMQWATQTTRTRVRL 163
           ADAYASMRLEVGSAYTLIF  MI+PLL+ MQWATQ TR +V L
Sbjct: 225 ADAYASMRLEVGSAYTLIFFFMIIPLLIGMQWATQATRKKVSL 267


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.139    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 497,831
Number of extensions: 20306
Number of successful extensions: 144
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 3
Length of query: 163
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 85
Effective length of database: 1,250,540
Effective search space: 106295900
Effective search space used: 106295900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 127 (53.5 bits)