BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0012.p
         (89 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309935|ref|YP_003774027.1| spermidine/putrescine ABC trans...   147   1e-37

>gi|300309935|ref|YP_003774027.1| spermidine/putrescine ABC
          transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 267

 Score =  147 bits (372), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 72/88 (81%), Positives = 79/88 (89%)

Query: 1  MKHSLRFYLQLTFTLLVCAFLIVPVVLSVLAGVTDNFFVGLSSGFTLRWVAQVWDTYQMT 60
          M++  RFYLQL FTLLVCAFL+VPVVLS+LAGVT+NFFVGLSSG TLRWVAQVW+ YQ T
Sbjct: 1  MQNRFRFYLQLGFTLLVCAFLVVPVVLSMLAGVTENFFVGLSSGLTLRWVAQVWEMYQPT 60

Query: 61 IWRSIAIALACLAVTLVVGVPLAYMLAR 88
          IWRS+ IALACLAVTL  GVPLAYMLAR
Sbjct: 61 IWRSLFIALACLAVTLAAGVPLAYMLAR 88


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.336    0.142    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 270,534
Number of extensions: 9030
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 1
Length of query: 89
Length of database: 1,619,870
Length adjustment: 59
Effective length of query: 30
Effective length of database: 1,340,505
Effective search space: 40215150
Effective search space used: 40215150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 123 (52.0 bits)