BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0010.p
         (345 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309933|ref|YP_003774025.1| Fe3+ ABC transporter periplasmi...   555   e-159
gi|300311545|ref|YP_003775637.1| Fe3+ ABC transporter periplasmi...    82   8e-17

>gi|300309933|ref|YP_003774025.1| Fe3+ ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 335

 Score =  555 bits (1430), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 263/308 (85%), Positives = 286/308 (92%)

Query: 38  ICYNCPPEWADWATQIKIIKEKTGITVPPDNKNSGQALAQIMAEKASPVADFTYVGVTFG 97
           ICYNCPPEWADWA QIK IKEKTG+TVPPDNKNSGQALAQ+ AEKASPVADF Y+GV+FG
Sbjct: 28  ICYNCPPEWADWAAQIKAIKEKTGVTVPPDNKNSGQALAQLTAEKASPVADFAYLGVSFG 87

Query: 98  IEAKKNDIVTPYKPAGWNDVPAGLKDPEGYWTTIHSGTMGLMVNVDALKGKPVPRSWADL 157
           IEAK  D+V  YKPA WND+P GLKDP+GYW TIHSGTMG+MVNVDALKGKPVP+SWADL
Sbjct: 88  IEAKNKDLVAAYKPAHWNDIPNGLKDPDGYWFTIHSGTMGIMVNVDALKGKPVPKSWADL 147

Query: 158 LKPEYKGLIGYLDPASAFVGYVGAVAVNQALGGTLDNFTPGINYFKALQKNQPIVPKQTS 217
            KPEYKGLIGYLDPASAFVGYVGAVA+NQALGGTLD+F+P I YFK LQKNQPIVPKQTS
Sbjct: 148 QKPEYKGLIGYLDPASAFVGYVGAVAINQALGGTLDDFSPAIGYFKNLQKNQPIVPKQTS 207

Query: 218 YARLISGEIPILFGYDFDAYRAKYKDKANVAFVIPAEGSVTVPYVVSLVKNGPNQANAKK 277
           YARLISGEIPIL GYDFDAYRAKYKD ANVAFVIP+EG+VTVPYVV+LVKN P+QA AKK
Sbjct: 208 YARLISGEIPILLGYDFDAYRAKYKDHANVAFVIPSEGTVTVPYVVALVKNAPHQAEAKK 267

Query: 278 VLDFLLSNEGQAIWANAYLRPVRASAISKEAEARFLPAADYARAKPVDYGKMAEVQRQFS 337
           VLDFLLS++GQAIWANAYLRPVRASA+SKEAE+RFLPAA+YARAK VDYGKMAE QR+F 
Sbjct: 268 VLDFLLSDQGQAIWANAYLRPVRASAMSKEAESRFLPAAEYARAKSVDYGKMAEAQRKFG 327

Query: 338 ERYLAEVK 345
           ERYLAEV+
Sbjct: 328 ERYLAEVR 335


>gi|300311545|ref|YP_003775637.1| Fe3+ ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 371

 Score = 81.6 bits (200), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 124/276 (44%), Gaps = 28/276 (10%)

Query: 52  QIKIIKEKTGITVPPDNKNSGQALAQIMAEKASPVADFTY-VGVTFGIEAKKNDIVTPYK 110
           +IK +++ TGI             A+++AEKA+P AD  + +  T      K  ++ PY 
Sbjct: 84  EIKWVRDSTGIVT-----------AKLLAEKANPQADVIWGLAATSLALLDKEGMLMPYA 132

Query: 111 PAGWNDVPAGLKDPEG--YWTTIHSGTMGLMVN-VDALK-GKPVPRSWADLLKPEYKGLI 166
           P G + + A  +       W  +      +  N V+A K G P P SWADL KP Y G I
Sbjct: 133 PQGLSAIDAKYRSAANPPAWVGMDVWASAICFNTVEAQKQGLPKPTSWADLTKPVYAGKI 192

Query: 167 GYLDPASAFVGYVGAVAVNQALGGTLDNFTPGINYFKALQKN--QPIVPKQTSYARLISG 224
              +PAS+  GY+   A  Q +G        G  Y  AL KN  Q          +  +G
Sbjct: 193 VMPNPASSGTGYLDVSAWLQMMGE-----DKGWAYMDALHKNIGQYTHSGSKPCKQAATG 247

Query: 225 EIPILFGYDFDAYRAKYKDKANVAFVIPAEGSVTVPYVVSLVKNGPNQANAKKVLDFLLS 284
           E PI   +++ A + K K+ A +  ++P+EG        ++VK   +   AKK+ DF  S
Sbjct: 248 EFPIGIAFEYRAVKTK-KEGAPIDVILPSEGLGWDIEATAIVKGSKHLEAAKKLADFSAS 306

Query: 285 NEGQAIWANAYLRPVRASAISKEAEARFLPAADYAR 320
            E  A+    Y +     AI   A+   L +ADY +
Sbjct: 307 KEAMAL----YEKNFAVVAIPGVAKPDELLSADYEK 338


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,066,126
Number of extensions: 46591
Number of successful extensions: 138
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 2
Length of query: 345
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 259
Effective length of database: 1,212,660
Effective search space: 314078940
Effective search space used: 314078940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)