BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0195.p
         (251 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310833|ref|YP_003774925.1| electron transfer flavoprotein ...   457   e-130
gi|300312145|ref|YP_003776237.1| flavoprotein subunit subunit be...    86   3e-18

>gi|300310833|ref|YP_003774925.1| electron transfer flavoprotein
           subunit beta [Herbaspirillum seropedicae SmR1]
          Length = 251

 Score =  457 bits (1176), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 230/251 (91%), Positives = 242/251 (96%)

Query: 1   MKVLVPVKRVVDYNVKVRVKSDGSGVDIANVKMSMNPFDEIAVEEATRLKEAGKVTEVIA 60
           MKVLVPVKRVVDYNVKVRVKSDGSGVDIANVKMSMNPFDEIAVEEA RLKE GKVTEVIA
Sbjct: 1   MKVLVPVKRVVDYNVKVRVKSDGSGVDIANVKMSMNPFDEIAVEEAVRLKEGGKVTEVIA 60

Query: 61  VSCGVTQCQETLRTAMAIGADRGILVETPADLDLQPLAVAKLLKALADKEQPQLIILGKQ 120
           VS GVTQCQETLRTAMAIGADRGIL E  AD++LQPLAVAK+LKALA+KEQPQLIILGKQ
Sbjct: 61  VSAGVTQCQETLRTAMAIGADRGILAEVGADVELQPLAVAKILKALAEKEQPQLIILGKQ 120

Query: 121 AIDDDSNQTGQMLAALLGWPQATFASKVVVEDGKVSVTREVDGGLETLSLTLPAIVTTDL 180
           AIDDD NQTGQMLAALLGWPQATFASKVV+E+GKV+VTREVDGGLETL+LTLPAI+TTDL
Sbjct: 121 AIDDDCNQTGQMLAALLGWPQATFASKVVLEEGKVTVTREVDGGLETLALTLPAIITTDL 180

Query: 181 RLNEPRYVTLPNIMKAKKKTLDIVKPDDLGVDVAPRVKTLKVAEPAKRSAGVKVPDVATL 240
           RLNEPRYVTLPNIMKAKKK LD VKP++LGVDVAPRVKTLKVAEPAKRSAGVKVPDVATL
Sbjct: 181 RLNEPRYVTLPNIMKAKKKQLDTVKPEELGVDVAPRVKTLKVAEPAKRSAGVKVPDVATL 240

Query: 241 VAKLRNEAKVI 251
           VAKL+NEAKVI
Sbjct: 241 VAKLKNEAKVI 251


>gi|300312145|ref|YP_003776237.1| flavoprotein subunit subunit beta
           [Herbaspirillum seropedicae SmR1]
          Length = 281

 Score = 85.9 bits (211), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 108/208 (51%), Gaps = 13/208 (6%)

Query: 1   MKVLVPVKRVVDYNVKVRVKSDGSGVDIANVKMSMNPFDEIAVEEATRLKE--AGKVTEV 58
           M ++V +K+V D + ++RV    + +    V   +NP+D  ++EEA R+K+   G+VT  
Sbjct: 1   MHIVVCIKQVPD-SAQIRVHPVTNTIMRQGVPAIINPYDLFSLEEALRIKDQVGGRVT-- 57

Query: 59  IAVSCGVTQCQETLRTAMAIGADRGILVE----TPADLDLQPLAVAKLLKALADKEQPQL 114
             ++ G  Q +  LR  ++ GAD  ILV       AD      A+A  ++ ++  +   L
Sbjct: 58  -VLTMGPPQAEAALRKCISFGADDAILVTDRAFAGADTLATSYALASAIQRISQDQAVDL 116

Query: 115 IILGKQAIDDDSNQTGQMLAALLGWPQATFASKVVVED---GKVSVTREVDGGLETLSLT 171
           ++ GKQ ID D+ Q G  +A  L     T+ SK+V  D    ++ + R  +GG++ L   
Sbjct: 117 VLAGKQTIDGDTAQVGPGIAKRLDLQLLTYVSKIVSLDPIAREIVIQRRAEGGVQVLQTR 176

Query: 172 LPAIVTTDLRLNEPRYVTLPNIMKAKKK 199
           LP ++T     NE R+ T+ N+ +A + 
Sbjct: 177 LPCLITMLEGSNEMRFATMENMFRAARH 204


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.132    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 669,170
Number of extensions: 24755
Number of successful extensions: 115
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 2
Length of query: 251
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 168
Effective length of database: 1,226,865
Effective search space: 206113320
Effective search space used: 206113320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 129 (54.3 bits)