BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0192.p (236 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC t... 244 5e-66 gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC t... 209 2e-55 gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC t... 194 5e-51 gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPa... 179 1e-46 gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t... 177 8e-46 >gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 238 Score = 244 bits (622), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 120/237 (50%), Positives = 165/237 (69%), Gaps = 6/237 (2%) Query: 1 MLEVANLHAYYDKSHILHGVDMHIQKSEIVALLGRNGTGRSTAVKALMGMVKSTGSIRFK 60 +L V L A Y S +LHGVD+ +Q+ EIV++LGRNG GRST +KALMG++ S G RF+ Sbjct: 7 LLSVTGLQAGYGHSRVLHGVDLTVQRGEIVSILGRNGAGRSTLLKALMGLLPSRGDCRFE 66 Query: 61 DEEIGGLRTFEIAHKGLGYVPESREIFPTLTVRQNLELGIK-DPKKQTRWTVDDMYRLFP 119 +I GL T IA G+GYVPESRE+FPTL+V QNL LG K P+ W DD++ LFP Sbjct: 67 GRDISGLPTHAIARLGMGYVPESREVFPTLSVAQNLLLGRKPGPQPGRGWCEDDIHALFP 126 Query: 120 RLRERENTPAFFXPAGVMSGGEQQMLTLCRTLMGDPDLIMIDEPTEGVAPKIVQEIAELL 179 L +R A +SGGEQQML L R L+G+P L+++DEPTEG+AP++V+++A L Sbjct: 127 ALYKRRQV-----AAAALSGGEQQMLALGRALLGNPSLLLVDEPTEGLAPQMVEQVARAL 181 Query: 180 QEIARRGISVFLIEQKLDIALKVCNRLYVMGHGTIVFEGTAAELQDNQPLRQEWLEV 236 QE+ RG++V L+EQK +AL++ R+YVMG G +VFEGT L + +++EWL + Sbjct: 182 QELRTRGVAVLLVEQKQALALELSQRVYVMGRGEMVFEGTPTGLSAQETVQREWLAL 238 >gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 233 Score = 209 bits (532), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 110/229 (48%), Positives = 150/229 (65%), Gaps = 7/229 (3%) Query: 1 MLEVANLHAYYDKSHILHGVDMHIQKSEIVALLGRNGTGRSTAVKALMGMV-KSTGSIRF 59 +L+V LH +Y +HIL G+D+ I+ E+VAL+GRNG G+ST +KALMG++ + G IR Sbjct: 5 LLQVQGLHGWYADAHILFGLDLEIRAGEVVALMGRNGAGKSTTLKALMGLLERRQGQIRL 64 Query: 60 KDEEIGGLRTFEIAHKGLGYVPESREIFPTLTVRQNLELGIKDPKKQT-RWTVDDMYRLF 118 +IG L + A GLGYVPE R IF L+V +NLE G + P+ WT ++ LF Sbjct: 65 AGRDIGKLAPHQRARLGLGYVPEDRRIFTELSVLENLETGRQPPRPGAPHWTPQALFELF 124 Query: 119 PRLRERENTPAFFXPAGVMSGGEQQMLTLCRTLMGDPDLIMIDEPTEGVAPKIVQEIAEL 178 P L P G MSGGEQQMLT+ RTLMG+P L+++DEP+EGVAP IV+++A + Sbjct: 125 PNL---GAMPQRL--GGRMSGGEQQMLTIARTLMGNPRLLLLDEPSEGVAPVIVEQMAAM 179 Query: 179 LQEIARRGISVFLIEQKLDIALKVCNRLYVMGHGTIVFEGTAAELQDNQ 227 +QE+ R GI++ L EQ L A VC+R Y++ G IV GT A LQ +Q Sbjct: 180 IQELKRSGIAILLCEQNLHFASLVCDRGYLLDQGRIVAAGTPASLQAHQ 228 >gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 194 bits (493), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 95/237 (40%), Positives = 154/237 (64%), Gaps = 9/237 (3%) Query: 1 MLEVANLHAYYDKSHILHGVDMHIQKSEIVALLGRNGTGRSTAVKALMGMVKST-GSIRF 59 +L+V ++H YY KSHIL GV + + E+V LLGRNG G++T +K+++G+V G + F Sbjct: 2 ILQVEDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPVQGRVLF 61 Query: 60 KDEEIGGLRTFEIAHKGLGYVPESREIFPTLTVRQNLELGIKDPKKQTRWTVDDMYRLFP 119 + + I GL +++IA +G+ VPE R IF LTV +NL + +K++ W ++++Y +FP Sbjct: 62 EGQLISGLPSYKIAARGVCLVPEHRGIFKLLTVEENLTMA---ARKESAWGLEEIYAIFP 118 Query: 120 RLRERENTPAFFXPAGVMSGGEQQMLTLCRTLMGDPDLIMIDEPTEGVAPKIVQEIAELL 179 RL+ER G +SGGEQQML + R LM P ++M+DEP EG+AP IV EI + Sbjct: 119 RLKERRKNGG-----GQLSGGEQQMLAIARALMTHPRVLMLDEPVEGLAPVIVDEIVAQI 173 Query: 180 QEIARRGISVFLIEQKLDIALKVCNRLYVMGHGTIVFEGTAAELQDNQPLRQEWLEV 236 ++I G+S+ L+EQ L++ ++ +R Y++ G IV+ G+ AE ++ ++ +L V Sbjct: 174 RQIKATGMSIILVEQNLEVCTQLADRHYIVEQGRIVYHGSNAEFLADEGVKDRYLGV 230 >gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 179 bits (455), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 147/237 (62%), Gaps = 6/237 (2%) Query: 1 MLEVANLHAYYDKSHILHGVDMHIQKSEIVALLGRNGTGRSTAVKALMGMVKS-TGSIRF 59 +L++++L ++Y +SHILH V++++ + E+V LLGRNG GR+T ++++MG+V + GSI+ Sbjct: 11 VLQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGLVGTRKGSIKI 70 Query: 60 KDEEIGGLRTFEIAHKGLGYVPESREIFPTLTVRQNLELGIKDPKKQTRWTVDDMYRLFP 119 +E L T +IAH G+GY PE R IF +L+ +NL L K ++D++Y +FP Sbjct: 71 NGQETINLATHKIAHHGVGYCPEERGIFSSLSAEENLMLPPFVSKTDKGMSIDEIYEMFP 130 Query: 120 RLRERENTPAFFXPAGVMSGGEQQMLTLCRTLMGDPDLIMIDEPTEGVAPKIVQEIAELL 179 L+ER N+ +SGGEQQML + R L L+++DE +EG+AP IVQ +A ++ Sbjct: 131 NLKERRNSQGTR-----LSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQALARMI 185 Query: 180 QEIARRGISVFLIEQKLDIALKVCNRLYVMGHGTIVFEGTAAELQDNQPLRQEWLEV 236 + +G ++ ++EQ A + +R YVM HG IV +++L+ E L V Sbjct: 186 TTLKAKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSQLEAKMQTLNELLGV 242 >gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 235 Score = 177 bits (448), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 93/236 (39%), Positives = 146/236 (61%), Gaps = 7/236 (2%) Query: 1 MLEVANLHAYYDKSHILHGVDMHIQKSEIVALLGRNGTGRSTAVKALMGMVK-STGSIRF 59 ML+ +H +Y LHGV ++++K EIV L+G NG G++T + L G + S+G + F Sbjct: 2 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF 61 Query: 60 KDEEIGGLRTFEIAHKGLGYVPESREIFPTLTVRQNLELG-IKDPKKQTRWTVDDMYRLF 118 + ++I L+T EI +GL PE R +FP+LTV +NL++G + ++ ++ LF Sbjct: 62 EGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEAIEQGIEYVFGLF 121 Query: 119 PRLRERENTPAFFXPAGVMSGGEQQMLTLCRTLMGDPDLIMIDEPTEGVAPKIVQEIAEL 178 PRL+ER AG MSGGEQQML + R LM P L+++DEPT G+AP ++ +I ++ Sbjct: 122 PRLKERAA-----QRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDI 176 Query: 179 LQEIARRGISVFLIEQKLDIALKVCNRLYVMGHGTIVFEGTAAELQDNQPLRQEWL 234 ++ I G++VFL+EQ + AL V +R YV+ +G +V T A L N +R+ +L Sbjct: 177 IRTIRESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYL 232 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.138 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 741,552 Number of extensions: 29689 Number of successful extensions: 472 Number of sequences better than 1.0e-08: 108 Number of HSP's gapped: 324 Number of HSP's successfully gapped: 122 Length of query: 236 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 154 Effective length of database: 1,231,600 Effective search space: 189666400 Effective search space used: 189666400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)