BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0191.p (252 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311565|ref|YP_003775657.1| branched-chain amino acid ABC t... 266 2e-72 gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPa... 196 1e-51 gi|300313284|ref|YP_003777376.1| branched-chain amino acid ABC t... 179 1e-46 gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 178 4e-46 gi|300311770|ref|YP_003775862.1| branched-chain amino acid ABC t... 176 2e-45 >gi|300311565|ref|YP_003775657.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 252 Score = 266 bits (679), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 128/242 (52%), Positives = 181/242 (74%) Query: 6 VVLSLRGVAKSFGNSRIIRDITMDVAPGERIALIGPNGAGKSTLFNMISGRFQPSGGDIV 65 V LSL+G+ K+F S I+R + +++ GER ALIGPNGAGKS+LF+++SGR++ G I Sbjct: 5 VALSLQGLHKAFDGSPILRGVDLELRAGERCALIGPNGAGKSSLFHLVSGRYRADAGRIT 64 Query: 66 LNGNSLLKLEPYEIYRQGLSRSFQITNIFAKLSVYENIRSSVLWSLGHRYSLFKFLNKLT 125 L+G + + P +I R GL+RSFQIT++F +LS +EN+R ++LW+LG+RY+ ++ + Sbjct: 65 LHGVDITRQSPQQINRLGLARSFQITSLFPRLSAFENVRCALLWTLGYRYAFWRRMGGSH 124 Query: 126 DVRERAEQLMEQVGLARRKDVLAGLLTYAEQRSLEIAMTVAGNPSVVLLDEPTAGMSRSE 185 + RA +++QVGLA R DV AG L+YAEQR+LE+A+T+A + SV+LLDEPTAGMSR+E Sbjct: 125 EASARALTVLQQVGLAARADVAAGELSYAEQRALELAVTIAADASVILLDEPTAGMSRAE 184 Query: 186 SEQAVELIRKLTEGRTLLMVEHDMSVVFGLADRIAVLAGGALIALESPEKIRHNHAVKEA 245 S V LIR++T G+TLLMVEHDM VVF LADRIAV+ G +IA ++ +IR N V+ Sbjct: 185 SAAMVALIREVTMGKTLLMVEHDMQVVFDLADRIAVMDNGRVIACDTAPRIRANEDVQAL 244 Query: 246 YL 247 YL Sbjct: 245 YL 246 >gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 256 Score = 196 bits (499), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 104/249 (41%), Positives = 149/249 (59%) Query: 4 NDVVLSLRGVAKSFGNSRIIRDITMDVAPGERIALIGPNGAGKSTLFNMISGRFQPSGGD 63 DV+L R + K F + + + + G ALIGPNGAGK+T FN+++ P+ G Sbjct: 2 TDVILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSGQ 61 Query: 64 IVLNGNSLLKLEPYEIYRQGLSRSFQITNIFAKLSVYENIRSSVLWSLGHRYSLFKFLNK 123 I+ NG + P +I RQG+ RSFQI+ +F +SV EN+R + LG + +K Sbjct: 62 ILFNGRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGLQRKLGTSFHFWKNGES 121 Query: 124 LTDVRERAEQLMEQVGLARRKDVLAGLLTYAEQRSLEIAMTVAGNPSVVLLDEPTAGMSR 183 L + ERA QL+E+V L L Y +R+LEIA T+A P ++LLDEPT GM Sbjct: 122 LKQLDERAMQLLEEVDLTSFAHTTTVDLPYGRKRALEIATTLAMEPELMLLDEPTQGMGH 181 Query: 184 SESEQAVELIRKLTEGRTLLMVEHDMSVVFGLADRIAVLAGGALIALESPEKIRHNHAVK 243 + ++ LI+K++ GRT+LMVEH+MSV+ G+ DRI+VL GAL+A S E++ N V Sbjct: 182 EDVDRVTALIKKVSAGRTILMVEHNMSVIAGICDRISVLQRGALLAEGSYEEVSRNPQVM 241 Query: 244 EAYLGDHHA 252 EAY+G A Sbjct: 242 EAYMGSTSA 250 >gi|300313284|ref|YP_003777376.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 179 bits (455), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 95/249 (38%), Positives = 150/249 (60%), Gaps = 1/249 (0%) Query: 5 DVVLSLRGVAKSFGNSRIIRDITMDVAPGERIALIGPNGAGKSTLFNMISGRFQPSGGDI 64 D L G++K +G+ DI++ APG R ALIGPNGAGK+T N+++G F PS G + Sbjct: 9 DTTLRTEGLSKRWGSFVANSDISLTFAPGARHALIGPNGAGKTTFINLLTGGFAPSSGRV 68 Query: 65 VLNGNSLLKLEPYEIYRQGLSRSFQITNIFAKLSVYENIRSSVLWSLGHRYSLFKFLNKL 124 G + L + ++G++R+FQI +FA L+V E++ ++ G +Y ++ + Sbjct: 69 WFGGEDITALPQHARVKRGMTRTFQINTLFAGLTVLESVVLAIQERRGLQYKWYQTVASQ 128 Query: 125 TDVRERAEQLMEQVGLARRKDVLAGLLTYAEQRSLEIAMTVAGNPSVVLLDEPTAGMSRS 184 T+V + A L+ + LA+ + L L Y +QR +EIA+ +A P V+LLDEP AG+ + Sbjct: 129 TEVVDEAMALLASLKLAQEANSLTRNLAYGKQRLVEIALALATQPKVLLLDEPAAGIPSA 188 Query: 185 ESEQAVELIRKLTEGRTLLMVEHDMSVVFGLADRIAVLAGGALIALESPEKIRHNHAVKE 244 ES + E+I +L T++ +EHDM +VF A+RI VL GG ++ +P +I + VKE Sbjct: 189 ESRELFEVIAQLPREVTIVFIEHDMGLVFRFAERITVLVGGKVLVEGTPAEIAADPRVKE 248 Query: 245 AYLGD-HHA 252 YLG+ HA Sbjct: 249 VYLGEAEHA 257 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 178 bits (451), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 99/259 (38%), Positives = 156/259 (60%), Gaps = 18/259 (6%) Query: 6 VVLSLRGVAKSFGNSRIIRDITMDVAPGERIALIGPNGAGKSTLFNMISGRFQPSGGDIV 65 ++L L ++K+FG ++++ + +V GE LIGPNGAGK+T+FN+I+G + S G I Sbjct: 1 MLLQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIR 60 Query: 66 LNGNSLLKLEPYEIYRQGLSRSFQITNIFAKLSVYENI-----------RSSVLWSLGHR 114 N + + + P++I +G++R+FQ +F ++++ EN+ +S+L +LG Sbjct: 61 FNDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDHLNYGVASMLLNLG-- 118 Query: 115 YSLFKFLNKLTDVRERAEQLMEQVGLARRKDVLAGLLTYAEQRSLEIAMTVAGNPSVVLL 174 F N + RERA +L+ V L + +LA L+Y EQR LE A +A P ++LL Sbjct: 119 ----GFRNAEKEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLL 174 Query: 175 DEPTAGMSRSE-SEQAVELIRKLTEGRTLLMVEHDMSVVFGLADRIAVLAGGALIALESP 233 DEP AGM+ +E +E E++ G T+ M+EHDM V GL +RIAVL G +IA +P Sbjct: 175 DEPVAGMNPAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTP 234 Query: 234 EKIRHNHAVKEAYLGDHHA 252 ++I++N V EAYLG A Sbjct: 235 DQIKNNQEVIEAYLGKEEA 253 >gi|300311770|ref|YP_003775862.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 176 bits (446), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 88/244 (36%), Positives = 157/244 (64%), Gaps = 4/244 (1%) Query: 7 VLSLRGVAKSFGNSRIIRDITMDVAPGERIALIGPNGAGKSTLFNMISGRFQPSGGDIVL 66 +L ++ ++KSFG + +++ + G+ +ALIGPNGAGKST FN+I+G+ +P G+++L Sbjct: 3 LLQVQQLSKSFGGVAALEELSFALPAGQMLALIGPNGAGKSTCFNLINGQLRPDRGEVLL 62 Query: 67 NGNSLLKLEPYEIYRQGLSRSFQITNIFAKLSVYENIRSSVLWSLGHRYSLFKFLNKLTD 126 +G S+ L+ I+R+G+ R+FQ++ F+ ++V +++++++L + L++ + L Sbjct: 63 DGQSITGLDARRIWRRGVGRTFQVSAAFSSMTVLQSVQAALLSHHRRLWQLWRPADSL-- 120 Query: 127 VRERAEQLMEQVGLARRKDVLAGLLTYAEQRSLEIAMTVAGNPSVVLLDEPTAGMSRSES 186 R++A +L++QVG+A + +L Y + + +E+AM ++ P ++L+DEPTAGM+ E Sbjct: 121 FRQQAMELLDQVGMAAQAQRACAVLAYGDIKRVELAMALSNAPRLLLMDEPTAGMATQER 180 Query: 187 EQAVELIRKLTEGR--TLLMVEHDMSVVFGLADRIAVLAGGALIALESPEKIRHNHAVKE 244 + + L R+L R +L EH M VVF ADRI VLA G L+A +P +R + V+E Sbjct: 181 QALMALTRRLVNERGIAVLFTEHSMDVVFAHADRILVLARGQLVADGAPAVVRADARVRE 240 Query: 245 AYLG 248 Y G Sbjct: 241 LYFG 244 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 700,663 Number of extensions: 27710 Number of successful extensions: 506 Number of sequences better than 1.0e-08: 127 Number of HSP's gapped: 310 Number of HSP's successfully gapped: 138 Length of query: 252 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 169 Effective length of database: 1,226,865 Effective search space: 207340185 Effective search space used: 207340185 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)