BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0190.p (416 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311564|ref|YP_003775656.1| branched-chain amino acid ABC t... 296 3e-81 gi|300314069|ref|YP_003778161.1| amino acid ABC transporter perm... 121 1e-28 gi|300312953|ref|YP_003777045.1| amino acid ABC transporter perm... 97 2e-21 gi|300313997|ref|YP_003778089.1| urea transport system, permease... 97 3e-21 gi|300313933|ref|YP_003778025.1| branched-chain amino acid ABC t... 96 5e-21 >gi|300311564|ref|YP_003775656.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 404 Score = 296 bits (757), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 147/308 (47%), Positives = 215/308 (69%), Gaps = 5/308 (1%) Query: 17 ILLP-----LALLLLPMVYAKSSALSFLSQVAIISVFALSYNILLGQTGLLSFGHAVYAG 71 +LLP L LL P+V+ +S+ALS LSQ+ + + LSYN+LLG+ G+LSFGHAVY+G Sbjct: 6 LLLPWLGFALVLLAAPLVFPQSAALSLLSQMGTMVLLCLSYNMLLGEGGMLSFGHAVYSG 65 Query: 72 LGGYCAIHLLNKTGADGLGLGLLALPLIGGLGGAIAGFVFGYISTRRAGTTYAMITLGIA 131 LG + AIHL+N+ L + +PL GGL GA+ G + GY++TRRAGTT+AMITLG+ Sbjct: 66 LGAFGAIHLMNRMAEGALAFPMTLVPLAGGLTGALCGVLLGYLTTRRAGTTFAMITLGLV 125 Query: 132 EMLVALALMLPGMSGGEAGMTTNRMLNHAILGINLGSDTQMYYFAWGWMFIATALMYAFT 191 E++ A LM P + GGE G++ NR++ +LGI+ G Q+YY GW+ + ++A Sbjct: 126 ELVSACVLMFPEVFGGEGGISGNRVIGEPVLGISYGPQIQVYYLIAGWLLVCAIAIWALR 185 Query: 192 KTPLGRLANAVRDNPERVAFIGFNPQKIRWTVMVIAGFFAGIAGGLSAVNYELVTIDNLG 251 TPLGR+ NAVRDNPER AFIG++PQ++R+ ++++ FFAG++GGLSA+N+E+V+ + +G Sbjct: 186 ATPLGRILNAVRDNPERAAFIGYDPQRVRYLALILSAFFAGVSGGLSAINFEIVSAEYVG 245 Query: 252 VAQSGMVLVATYLGGVGYFLGPVAGALIYVLFLTVISTITKAWLLYFGVLFITVVMFTPE 311 +SG +L+ T++GG YF GP+ G ++ VLF + +S T+AW Y G FI +VM P Sbjct: 246 ALRSGAILLFTFIGGSAYFYGPIVGGVVGVLFSSWLSAYTQAWQFYLGAFFILIVMTAPG 305 Query: 312 GLLGLLKQ 319 GL L+ Q Sbjct: 306 GLASLIDQ 313 >gi|300314069|ref|YP_003778161.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 326 Score = 121 bits (304), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 87/260 (33%), Positives = 141/260 (54%), Gaps = 12/260 (4%) Query: 38 FLSQVAIISVFALSYNILLGQTGLLSFGHAVYAGLGGYCAIHLLNKTG-ADGLGLGLLAL 96 FL ++ ++FA ++N+L+G TGLLSFGHA + G GY L G LGL Sbjct: 25 FLMKMLCFALFACAFNLLIGYTGLLSFGHAAFLGWAGYMCGQALKVWGLPTELGL----- 79 Query: 97 PLIGGLGGAIAGFVFGYISTRRAGTTYAMITLGIAEMLVALALMLPGMSGGEAGMTTNRM 156 +IG L GA+ G V G ++ RR G + MITL +A+ML +AL P +GGE G+ + Sbjct: 80 -IIGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQAP-FTGGEDGL--QGV 135 Query: 157 LNHAILG-INLGSDTQMYYFAWGWMFIATALMYAFTKTPLGRLANAVRDNPERVAFIGFN 215 +LG +NL SD +YY AL+ +P G++ A+++N R +G++ Sbjct: 136 PRGKLLGFLNLESDMTLYYVVLAIAVAGFALIVRTIHSPFGQVLKAIKENEPRAISLGYD 195 Query: 216 PQKIRWTVMVIAGFFAGIAGGLSAVNYELVTIDNLGVAQSGMVLVATYLGGVGYFLGPVA 275 + + V++ +G+AG + T+ ++ + SG+V++ T +GG+G LGP+ Sbjct: 196 VARYKLLAFVLSAGLSGLAGATKTLVLGFETLTDVHWSMSGLVVLMTLVGGLGTILGPIV 255 Query: 276 GALIYVLFLTVISTITKAWL 295 GA+I ++ + I AWL Sbjct: 256 GAVIIIMLENKLGDI-GAWL 274 >gi|300312953|ref|YP_003777045.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 317 Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 88/281 (31%), Positives = 139/281 (49%), Gaps = 9/281 (3%) Query: 39 LSQVAIISVFALSYNILLGQTGLLSFGHAVYAGLGGYC-AIHLLNKTGADGLGLGLLALP 97 L+++ I ++ A S N +LG G++SFGHAV+ GLG Y AI + + L + Sbjct: 32 LTRILIFAMVAASLNFILGYGGMVSFGHAVFFGLGAYVTAIASFHGVTSAWL------IW 85 Query: 98 LIGGLGGAIAGFVFGYISTRRAGTTYAMITLGIAEMLVALALMLPGMSGGEAGMTTNRML 157 L+ L A+ G V G I+ R + MIT+ +A++ + G + T R L Sbjct: 86 LLAALVTALVGLVIGVIALRTRAVYFIMITMALAQLFYYFFVGFRYYGGDDGLQVTARPL 145 Query: 158 NHAILGINLGSDTQMYYFAWGWMFIATALMYAFTKTPLGRLANAVRDNPERVAFIGFNPQ 217 G+++ D Y+ W+ + L+ + G NA+R N R IG+ Sbjct: 146 LG--FGLDMSGDNAFYWVVLAWLAASFILLQRLLASRFGLALNAIRQNERRAQAIGYPAL 203 Query: 218 KIRWTVMVIAGFFAGIAGGLSAVNYELVTIDNLGVAQSGMVLVATYLGGVGYFLGPVAGA 277 + + VIA AGIAG L ++ + L +QSG++LV LGGVGYF G + GA Sbjct: 204 RYKLAAFVIAAVIAGIAGSLIGMSNLFASPKLLHWSQSGILLVMVALGGVGYFYGGLLGA 263 Query: 278 LIYVLFLTVISTITKAWLLYFGVLFITVVMFTPEGLLGLLK 318 ++L V+ST + W +Y G++ + VVM P G+ L+ Sbjct: 264 AAFLLLEEVLSTHFEYWQIYVGLILLLVVMVAPRGVSSLVS 304 >gi|300313997|ref|YP_003778089.1| urea transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 376 Score = 97.1 bits (240), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 92/336 (27%), Positives = 150/336 (44%), Gaps = 33/336 (9%) Query: 15 VLILLPLALLLLPM---VYAKSSALSFLSQVAIISVFALSYNILLGQTGLLSFGHAVYAG 71 VL LLP+ LL P ++ S ++ + + ++ AL+ +++ G TG+LS GH V+ Sbjct: 25 VLALLPVCNLLFPAGSALHVSSYTVALVGKFMCYAMAALALDLVWGYTGILSLGHGVFFA 84 Query: 72 LGGYC-AIHLLNKTGADGL----------GLGLLALPLIGGLGGAI-------------A 107 LGGY ++L+ G DG+ L A P + Sbjct: 85 LGGYAHGMYLMRAIGRDGVYQSDLPDFMVFLNWKAYPWYWWMTDHFWFAMLLVVLVPGLL 144 Query: 108 GFVFGYIS--TRRAGTTYAMITLGIAEMLVALALMLPGMSGGEAGMTT-NRMLNHAILGI 164 FVFGY + +R G +++IT + + L GG G T R+L I Sbjct: 145 AFVFGYFAFRSRIKGVYFSIITQAMTFAFMLLFFRNDTGFGGNNGFTDFKRILGFTITAP 204 Query: 165 NLGSDTQMYYFAWGWMFIATALMYAFTKTPLGRLANAVRDNPERVAFIGFNPQKIRWTVM 224 + +Y G +F A L + LGR+ VRD+ R+ FIG+NP + V Sbjct: 205 --ATKAVLYLVTLGLLFGALVLCRMIVTSKLGRVLQGVRDSESRLMFIGYNPLWFKLFVW 262 Query: 225 VIAGFFAGIAGGLSAVNYELVTIDNLGVAQSGMVLVATYLGGVGYFLGPVAGAL-IYVLF 283 ++ GIAG L ++ + A S +++ +GG G +GP+ GA + L Sbjct: 263 TLSAVICGIAGALYVPQVGIINPSEMSPANSIEMVIWAAVGGRGTLIGPIIGAFTVNGLK 322 Query: 284 LTVISTITKAWLLYFGVLFITVVMFTPEGLLGLLKQ 319 + WL G++FI V +F P+G+LGL+++ Sbjct: 323 SWFTAAFPDLWLYALGLIFILVTLFLPQGILGLVQK 358 >gi|300313933|ref|YP_003778025.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 334 Score = 95.9 bits (237), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 88/289 (30%), Positives = 145/289 (50%), Gaps = 8/289 (2%) Query: 40 SQVAIISVFALSYNILLGQTGLLSFGHAVYAGLGGYCAIHLLNKTGADGLGLGLLALPLI 99 ++V + ++ AL N+LLG TGL+SFG ++ G+G Y A +L + L LA Sbjct: 31 TEVLVFALAALGCNLLLGYTGLMSFGQGIFFGVGSYTAGVVLLQLKLALLPALALAALGG 90 Query: 100 GGLGGAIAGFVFGYISTRRAGTTYAMITLGIAEMLVALALMLPGMSGGEAGMTTNRMLNH 159 + + F S R+ GT + M+TL A+M LA + ++GG+ G+ Sbjct: 91 ALVALLVGWF-----SIRQRGTYFVMLTLAFAQMFYFLAYTMKDVTGGDNGLLDIPRPPL 145 Query: 160 AILGINL--GSDTQMYYFAWGWMFIAT-ALMYAFTKTPLGRLANAVRDNPERVAFIGFNP 216 A+ G+ L + + YY +F+ L+ + LG+ AVR+N R + +G++ Sbjct: 146 ALFGLTLLPTTSSWQYYTVVAILFVLVFWLLQRVVDSVLGKTLLAVRENEARASALGYDV 205 Query: 217 QKIRWTVMVIAGFFAGIAGGLSAVNYELVTIDNLGVAQSGMVLVATYLGGVGYFLGPVAG 276 + ++ VI+G G+AGGL A+ + + N+ S +LV T +GG G V G Sbjct: 206 RLLKLAAFVISGAVTGLAGGLHAMMTGVAPLSNIEYHTSEAILVMTVIGGTGNLFASVLG 265 Query: 277 ALIYVLFLTVISTITKAWLLYFGVLFITVVMFTPEGLLGLLKQVDGASR 325 A YVL +ST+ WL+ G+L I V ++ +GL GL ++ A R Sbjct: 266 ASFYVLVGNWLSTLWPRWLMLLGLLLIAVSLYMQKGLFGLAMKIIDAVR 314 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.326 0.142 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,106,071 Number of extensions: 42164 Number of successful extensions: 308 Number of sequences better than 1.0e-08: 23 Number of HSP's gapped: 283 Number of HSP's successfully gapped: 23 Length of query: 416 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 328 Effective length of database: 1,203,190 Effective search space: 394646320 Effective search space used: 394646320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 132 (55.5 bits)