BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0183.p (403 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312108|ref|YP_003776200.1| acyl-CoA transferases/carnitine... 190 2e-49 gi|300312971|ref|YP_003777063.1| acyl-CoA transferases/carnitine... 189 3e-49 gi|300310600|ref|YP_003774692.1| acyl-CoA transferases/carnitine... 72 1e-13 >gi|300312108|ref|YP_003776200.1| acyl-CoA transferases/carnitine dehydratase [Herbaspirillum seropedicae SmR1] Length = 399 Score = 190 bits (483), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 129/409 (31%), Positives = 209/409 (51%), Gaps = 21/409 (5%) Query: 2 NKLLEGVTVLDLTNVLSGPFTGYQMALLGANVIKVETPGAGDLARQLGADSDLNKEKMGT 61 ++ LEG+TV+ L + ++ PF Q+A LGA VIK+E PG GD AR G DS +N + + Sbjct: 5 HRPLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFAR--GYDSRVNG--LSS 60 Query: 62 SFLAQNAGKRSISLNLKSAKGKEVLRRLAGNADVILENFRPGVMDRLGVGYNALKDEFPR 121 F+ N K S++LNLK +G+ ++ +L ADV+++N PG LG+ AL PR Sbjct: 61 HFVWTNRSKESLTLNLKDEEGRRIIDQLLQQADVLVQNLAPGAAAGLGLSAQALHARHPR 120 Query: 122 LVYCAISGFGQTGPLADAPAYDQIIQGRSGVMSITGDEQSAPLRVGYPVCDTIGGMTAAF 181 L+ C ISG+G+ GP D AYD +IQ +G +S+TG ++ G + D GM A Sbjct: 121 LIVCDISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTPDDV-VKAGCSIADIAAGMYAYS 179 Query: 182 AIASALVS---RNNTGKGCFIDVSMLDSVMVTMGWIVSNQLIAGRSPVPMGNDNFTASPS 238 I +AL+ G+G ID+SML+S+ M + + +P+ G ++ T P Sbjct: 180 NILAALIKRGREGREGRGSHIDLSMLESLAEWMSFPLYYAYQGASAPLRSGAEHATIYPY 239 Query: 239 GAFRTGDG-LLNIAANKQEQFEILCD-LLGRSDLKTDPRFAEREIRKTNRKALSEILEEE 296 G F GDG + + + ++++ C+ +L + L +D RF+ R +R L +++ + Sbjct: 240 GPFSAGDGKTVMLGLQNEREWKVFCEQVLQDAALASDARFSSNARRHEHRDVLRQLILDV 299 Query: 297 LRRGDAAEWERKFNQAGVPAGQVLSVLDALTQDQVQHRGLLMKVLFNKEDLDQTQEITLT 356 A + + ++A + +V ++ Q+ QH L + + + + L Sbjct: 300 FAGLSAEQVAARLDEAQIANARVNTM-----QELWQHPQLAARQRWTEVATPVGKVAALL 354 Query: 357 RSGF--TIDGEQTGVRHGPPRLGQHTDEILLATGYTPANISNLREEGVV 403 G + D + P LGQHT+ IL A GY I+ LRE G V Sbjct: 355 PPGANDSYDYRMEAI----PALGQHTESILSALGYEAGQIAALRERGAV 399 >gi|300312971|ref|YP_003777063.1| acyl-CoA transferases/carnitine dehydratase [Herbaspirillum seropedicae SmR1] Length = 415 Score = 189 bits (481), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 132/418 (31%), Positives = 200/418 (47%), Gaps = 32/418 (7%) Query: 5 LEGVTVLDLTNVLSGPFTGYQMALLGANVIKVETPGAGDLARQLGADSDLNKEKMGTSFL 64 L G+ VL+L +++GPF +A GA+VIKVE PG GD RQ D GTS Sbjct: 11 LAGIKVLELGTLIAGPFCSRMLAEFGADVIKVEAPGNGDPLRQWRVLKD------GTSLW 64 Query: 65 --AQNAGKRSISLNLKSAKGKEVLRRLAGNADVILENFRPGVMDRLGVGYNALKDEFPRL 122 Q K+SI+LN+K + +E+ R+LA ADVI+EN+RPGV+++ +GY LK P Sbjct: 65 WSVQARNKKSITLNMKDERAQEIARKLALEADVIIENYRPGVLEKWKLGYEDLKQLNPAT 124 Query: 123 VYCAISGFGQTGPLADAPAYDQIIQGRSGVMSITGDEQSAPLRVGYPVCDTIGGMTAAFA 182 + +SG+GQTGPL D P + I + G+ ++G P+R+G + D+I + Sbjct: 125 IMVRLSGYGQTGPLRDLPGFGAIGESMGGIRYVSGHPDRPPVRIGISIGDSIAALHGVIG 184 Query: 183 IASALVSRNNT--------------GKGCFIDVSMLDSVMVTMGWIVSNQLIAGRSPVPM 228 AL R+ T G+G +DV++ ++V M +V AG Sbjct: 185 AMMALRHRDVTGGRWNGKQGADCVAGQGQMVDVALYEAVFNMMESMVPEFDFAGVVRERT 244 Query: 229 GNDNFTASPSGAFRTGDGL-LNIAANKQEQFEILCDLLGRSDLKTDPRFAEREIRKTNRK 287 G PS + TG+G+ + IA N F+ L +GR D+ DP A + R + Sbjct: 245 GGALPGIVPSNTYTTGEGMNIVIAGNGDAIFKRLMSAIGREDMANDPGLARNDGRVPRTE 304 Query: 288 ALSEILEEELRRGDAAEWERKFNQAGVPAGQVLSVLDALTQDQVQHRGLLMKVLFNKEDL 347 + +++ A VP G++ SV D + Q L + +F + Sbjct: 305 EIDAAIQQWCSTQTIETALATLQAADVPVGKIYSVKDMMNDAQ-----FLARDMFEQHQF 359 Query: 348 DQTQEITLTRSGFTIDGEQTG--VRHGPPRLGQHTDEILLATGYTPANISNLREEGVV 403 + L G T +T + P LG H+DEIL + GY A+I LR++GVV Sbjct: 360 ADGTPVKL--PGITPKMSETPGQTKWLGPELGAHSDEILQSLGYDEAHIKMLRDQGVV 415 >gi|300310600|ref|YP_003774692.1| acyl-CoA transferases/carnitine dehydratase [Herbaspirillum seropedicae SmR1] Length = 469 Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/212 (26%), Positives = 96/212 (45%), Gaps = 22/212 (10%) Query: 2 NKLLEGVTVLDLTNVLSGPFTGYQMALLGANVIKVETPGAGDLARQLGADSDLNKEKMGT 61 ++ L G+ VLDLT +L+GP +A LGA V++++ G + + E + Sbjct: 205 DRPLRGIRVLDLTRILAGPVATRFLAGLGAEVLRIDPYG--------WEEPNTVPEVV-- 254 Query: 62 SFLAQNAGKRSISLNLKSAKGKEVLRRLAGNADVILENFRPGVMDRLGVGYNALKDEFPR 121 GKR LNLK + LRRL G+AD+++ +R + +LG+ ++ P Sbjct: 255 ------LGKRCARLNLKDPADLDTLRRLMGHADILVHGYRSDALAKLGLDAAQRRELNPA 308 Query: 122 LVYCAISGFGQTGPLADAPAYDQIIQGRSGV----MSITGDEQSAPLRVGYPVCDTIGGM 177 L+ ++ +G +G +D +IQ +G+ M + G +AP+ + D G Sbjct: 309 LIDVSLDAYGWSGAWQCRRGFDSLIQMSTGIAEAGMRVMG--SAAPVNLPVQAIDHATGY 366 Query: 178 TAAFAIASALVSRNNTGKGCFIDVSMLDSVMV 209 A A L R G G + S+ + V Sbjct: 367 LMAAAALRGLTLRMTRGVGIEVRASLARTAAV 398 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.135 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,304,757 Number of extensions: 57039 Number of successful extensions: 178 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 171 Number of HSP's successfully gapped: 3 Length of query: 403 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 316 Effective length of database: 1,207,925 Effective search space: 381704300 Effective search space used: 381704300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)