BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0180.p
         (342 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310664|ref|YP_003774756.1| xanthine/CO dehydrogenase matur...   362   e-101

>gi|300310664|ref|YP_003774756.1| xanthine/CO dehydrogenase
           maturation protein [Herbaspirillum seropedicae SmR1]
          Length = 345

 Score =  362 bits (930), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/347 (52%), Positives = 242/347 (69%), Gaps = 11/347 (3%)

Query: 1   MDSIDLEVLKMAIAWSEGGAYTLLVTVVRTWGSAPRPVGSMMVIRGDGHVRGSISGGCIE 60
           MDSIDL+VLK +  W E G   LL TVVRTWGSAPRPVG+M+ +R DG + GS+SGGCIE
Sbjct: 1   MDSIDLDVLKRSQQWLEAGRGVLLATVVRTWGSAPRPVGAMLALRDDGALVGSVSGGCIE 60

Query: 61  DDLIHQIRSGEFQATHHVERSACTLTYGISADEAHRFGLPCGGTLQVVVEQVTEASQLHA 120
           DDLI  +     Q    V +    L YG+ AD+AHRFGLPCGGTL++V E ++  S++  
Sbjct: 61  DDLIASV-----QRDGIVPQRPGRLVYGVDADQAHRFGLPCGGTLELVTEPLSAQSRIGE 115

Query: 121 LLQAVEQQGLMTRQLDLRTGALTLQRGMPDAQLHFDGECLTTAHGPRYRLIIVGAAQMSR 180
           LL  + +  L+ R+L LR+G + L+     + L  D   L T HGPRYRL+++GA ++SR
Sbjct: 116 LLSMLAEGRLVHRRLCLRSGEVRLESAPAGSSLQVDAHALVTVHGPRYRLLVIGAGELSR 175

Query: 181 YVATMALMLDYEVIVCDPREEYLDEWDIARVQLSREMPDDLLLRLQLDAHSAVLTLTHDP 240
            +  MAL LD++V VCDPR EYLD+WD+A V+L R MPDD +  +Q DA SAVL LTHDP
Sbjct: 176 ILCAMALALDFQVTVCDPRSEYLDQWDLAGVELVRSMPDDTVDAMQPDACSAVLALTHDP 235

Query: 241 KLDDMALLEALKSPAFYVGAIGSRSNNKKRRERLSLFDVSDAEIARLHGPVGMYIGARTP 300
           KLDD+AL++ALK+PAFYVGA+GSR+NN  RRERL LFD++ A++  L GPVG++IG++TP
Sbjct: 236 KLDDLALMQALKTPAFYVGALGSRANNHARRERLRLFDLTAAQLQALRGPVGIFIGSKTP 295

Query: 301 PEIAISILAEMTCIRNGT------AVLQTHAIRPNSLLAADDAACSL 341
            EIAIS++AE+  +RNG        V +  ++R      +  +AC L
Sbjct: 296 AEIAISVMAEIVAVRNGVLLPRVWGVEEAKSLRGAPAAESSGSACRL 342


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,068,958
Number of extensions: 44515
Number of successful extensions: 149
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 256
Effective length of database: 1,212,660
Effective search space: 310440960
Effective search space used: 310440960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)