BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0179.p
         (383 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309488|ref|YP_003773580.1| 4-hydroxybutyrate dehydrogenase...   176   2e-45
gi|300313015|ref|YP_003777107.1| maleylacetate reductase [Herbas...    99   7e-22

>gi|300309488|ref|YP_003773580.1| 4-hydroxybutyrate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 379

 Score =  176 bits (447), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 129/378 (34%), Positives = 194/378 (51%), Gaps = 24/378 (6%)

Query: 17  GASARLGELAKGLGCRSVLIVTDAGVEKAGLLKAAQDGLRTAGIAYAVYNGVQADPAEAV 76
           GA A L +    LG +  L+VTD G+  AGLL      L+  G+   VY+    +P E  
Sbjct: 15  GALALLQQECDRLGIKKPLVVTDMGIRNAGLLDKVLGQLKE-GVGAVVYDQTPPNPNEGA 73

Query: 77  VLDAVAAATAIKADGVIGLGGGSSLDVAKLVALLAKGQEKLADIY----GVGNAKGPRLP 132
           V  AVA       DG++ +GGGSS+D+AK VA+    +  L        G+ N      P
Sbjct: 74  VRAAVALFRQHGCDGIVAVGGGSSIDLAKGVAVCGTHEGPLKSFALIEGGLANITAKTAP 133

Query: 133 LLLAPTTAGTGSEVTAISIVTTGEGEKKGVVSPVLVPDWAVLDADLTLGLPAHVTAATGI 192
           ++  PTTAGTGSEV   +I+   +G K G++SP LVP  A+ D +LTLGLP  +TAATG+
Sbjct: 134 VIAIPTTAGTGSEVGRGAILILDDGRKVGIISPYLVPKLAICDPELTLGLPPLMTAATGM 193

Query: 193 DAMVHAIEAFTSKRLKNPVSDCLAREALSLLSKNIHEVCRNGSNREARQNMLLGAMLAGM 252
           DA+ H +E F +    NP +D +A + L     +I    R   +REAR NM+  +M   M
Sbjct: 194 DAIAHCLETFMAPSF-NPPADGIALDGLWRAWAHIERATREPGDREARLNMMSASMQGAM 252

Query: 253 AFANAPVAGVHALAYPVGA---RFHVPHGLSNSLVLPAVLRFNSHAAS----EQYAQLAD 305
           AF    +  VH+L++ +G    R H  HG  N++ LPA++ FN  AAS     + A++A 
Sbjct: 253 AFQKG-LGCVHSLSHSLGGINPRLH--HGTLNAIFLPAIIAFNESAASMVKDNKMARMAH 309

Query: 306 IIIPGVKGTTEEKSQLLVTRLAALPVELGLQTRLGDVGITKDDLAMLAEDAMKQTRLLIN 365
            +  G         + +  R       LGL   LG++G+T+     + + A+        
Sbjct: 310 AMGLGSGAEIGPAIREMSRR-------LGLPAGLGELGVTESMFPQIIQGALADHSHK-T 361

Query: 366 NPREIAYEHALAIYEEVL 383
           NPRE + +  L + ++ +
Sbjct: 362 NPREASEQDYLHMLQQSM 379


>gi|300313015|ref|YP_003777107.1| maleylacetate reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 356

 Score = 98.6 bits (244), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 109/382 (28%), Positives = 178/382 (46%), Gaps = 39/382 (10%)

Query: 1   VQTFEFQSPRSSLV-GPGASARLGELAKGLGCRSVLIVTDAGVEKAGLLKAAQDGLRTAG 59
           +Q F + S  + ++ G G+   L    + LG +  L++   G        AA  G R AG
Sbjct: 1   MQAFTYTSAAARVIFGHGSLQHLVRETELLGAQRALVLCTPGQRAEAERVAALIGARCAG 60

Query: 60  IAYAVYNGVQADPAEAVVLDAVAAATAIKADGVIGLGGGSSLDVAKLVALLAKGQEKLAD 119
           I       V   P E     A   A A+ AD  I +GGGS++ + K +AL ++       
Sbjct: 61  I---FDQAVMHVPIE-TARHAREVARALGADCAIAIGGGSTMGLGKAIALESE------- 109

Query: 120 IYGVGNAKGPRLPLLLAPTTAGTGSEVTAISIVTTGEGEKKGVVSPVLVPDWAVLDADLT 179
                      LP+L  PTT   GSE+T I  +T    +K G  + VL P   + D  L+
Sbjct: 110 -----------LPILAIPTTY-AGSEMTPIYGLTEAGRKKTGRDARVL-PRTVIYDPALS 156

Query: 180 LGLPAHVTAATGIDAMVHAIEAFTSKRLKNPVSDCLAREALSLLSKNIHEVCRNGSNREA 239
           LGLP  ++  +GI+AM HA E   +    NP+   LA E L  L++ + ++     + +A
Sbjct: 157 LGLPLDLSVTSGINAMAHAAEGLYAPD-ANPIMSLLAEEGLRALAEGLPQLAARADDIDA 215

Query: 240 RQNMLLGAMLAGMAFANAPVAGVHALAYPVGARFHVPHGLSNSLVLPAVLRFNSHAASEQ 299
           R   L GA L G    N  ++  H L + +G  +++PH  +++++LP  L +N+ AA + 
Sbjct: 216 RSRCLYGAWLCGTVLGNVGMSLHHKLCHTLGGSYNLPHAQTHTVILPHALAYNAAAAPQA 275

Query: 300 YAQLADIIIPGVKGTTEEKSQLLVTRLAALPVELGLQTRLGDVGITKDDLAMLAEDAMKQ 359
             ++A  +  GV    E+ +Q +     AL   L L+    ++G+  + LA   E A++ 
Sbjct: 276 MQRIARAL--GV----EDAAQGVYALARALHAPLSLK----ELGMPYEALAQCTEIALQN 325

Query: 360 TRLLINNPREIAYEHALAIYEE 381
                 NPR +  E   A+ E+
Sbjct: 326 A---YANPRPLQREALHALLED 344


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.133    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 986,474
Number of extensions: 36293
Number of successful extensions: 158
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 2
Length of query: 383
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 296
Effective length of database: 1,207,925
Effective search space: 357545800
Effective search space used: 357545800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)