BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0174.p
         (180 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312559|ref|YP_003776651.1| xanthine dehydrogenase subunit ...   105   2e-24
gi|300310654|ref|YP_003774746.1| isoquinoline 1-oxidoreductase s...   100   5e-23

>gi|300312559|ref|YP_003776651.1| xanthine dehydrogenase subunit A
           [Herbaspirillum seropedicae SmR1]
          Length = 494

 Score =  105 bits (262), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/158 (41%), Positives = 85/158 (53%), Gaps = 14/158 (8%)

Query: 7   IKLVVNGTTYERAV-EPRLLLSDFLRHTLGLTGTHVGCEHGVCGACTIMV---DGD---- 58
           I+    G T+  A   P   +   LR  L  TGT  GC  G CGACT++V    G+    
Sbjct: 8   IQFYFRGQTHSVAGHSPTRTVLQHLREDLHCTGTKEGCAEGDCGACTVVVGELQGEQLAL 67

Query: 59  -SIRACLMLAVQADGCVVETVEGLGTVD-QLNPLQQAFHSCHGLQCGFCTPGMLMTCTDM 116
            ++ AC+      DG  + TVE L   D  L+P+QQA   CHG QCGFCTPG +M+   +
Sbjct: 68  KTVNACIQFLPTLDGRALFTVEDLKQADGSLHPVQQAMVECHGSQCGFCTPGFVMSLWGL 127

Query: 117 LKKYPLE----SDAEIRDGLSGNLCRCTGYVHIVDAVK 150
             ++  +    S  EI D LSGNLCRCTGY  I+DA +
Sbjct: 128 YLRHEQDGVTPSKREIDDALSGNLCRCTGYRPIIDAAR 165


>gi|300310654|ref|YP_003774746.1| isoquinoline 1-oxidoreductase
           subunit alpha oxidoreductase [Herbaspirillum seropedicae
           SmR1]
          Length = 160

 Score =  100 bits (250), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 80/148 (54%)

Query: 1   MSKNLDIKLVVNGTTYERAVEPRLLLSDFLRHTLGLTGTHVGCEHGVCGACTIMVDGDSI 60
           M K   I   VNG      +     L + LR+ L L G   GC  G CGACT++VDG + 
Sbjct: 1   MHKQEPITFHVNGVPVSLDIAADAPLLNVLRNDLCLNGPKFGCGLGECGACTVLVDGVAA 60

Query: 61  RACLMLAVQADGCVVETVEGLGTVDQLNPLQQAFHSCHGLQCGFCTPGMLMTCTDMLKKY 120
           R+C++         V T++GL    +L+P+QQAF    G QCG+C  GM+MT   +L + 
Sbjct: 61  RSCVIPLAGVAARHVTTLDGLEQDGRLDPVQQAFIDEQGAQCGYCLNGMIMTIKALLLRS 120

Query: 121 PLESDAEIRDGLSGNLCRCTGYVHIVDA 148
           P  S+ EIR  L  NLCRC  +V I+ A
Sbjct: 121 PTPSEDEIRHELDFNLCRCGTHVEILRA 148


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 526,981
Number of extensions: 18749
Number of successful extensions: 40
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 2
Length of query: 180
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 101
Effective length of database: 1,245,805
Effective search space: 125826305
Effective search space used: 125826305
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)