BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0172.p
         (794 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312560|ref|YP_003776652.1| xanthine dehydrogenase subunit ...   160   3e-40

>gi|300312560|ref|YP_003776652.1| xanthine dehydrogenase subunit B
           [Herbaspirillum seropedicae SmR1]
          Length = 789

 Score =  160 bits (406), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 180/716 (25%), Positives = 303/716 (42%), Gaps = 47/716 (6%)

Query: 22  EDPRL-LSGHGSYVDD-KHPAGMLHVAFRRSDQSYAKILSIDYSAALEVPGVVAIFTAEH 79
           E  RL ++G   Y DD     G LH A   S +++A++ +ID       PGV A+FTA  
Sbjct: 29  ESARLHVTGEAVYTDDIPELRGTLHAALGLSQKAHARVRAIDLEKVKAAPGVKAVFTAAD 88

Query: 80  LESMVKPIYATSKMPHYHPTAIYPLARGKVRFVGEAVVAVVADSRYIAEDAMEHIHIDYE 139
           +    +       + H  P     LA G V++VG+ +  VVADS  +A  A     IDYE
Sbjct: 89  IPGDNE----CGAILHDDPV----LADGLVQYVGQPLFIVVADSHELARRAARLAVIDYE 140

Query: 140 LLPNVVDPEVAAEPGAPLLHEEAGTNVLVQREFRRGDIDAVMAEAPVKVAARFRFHRRTA 199
            LP ++ P  A           A + VL      RG+    +A AP ++  +F    +  
Sbjct: 141 ELPAILTPRQA---------HAAQSYVLPPMHLSRGEPAIALALAPHRLRGQFDVGGQEQ 191

Query: 200 LAMENRTYLAEYDQGKRSLTLYSSTGSPGIIRDALVDILTIPGNRLRVIAPDVGGSFGGK 259
             +E +   A   +G R + +Y ST  P  ++  +  +L +  + + V    +GG FGGK
Sbjct: 192 FYLEGQISYAIPKEG-RGMHVYCSTQHPSEMQHHVATVLGLASHDVLVECRRMGGGFGGK 250

Query: 260 GSL-YPEEILVCALARHMGKPIKWTGDRMEDLSATSQAFDERIDAELALDAEGHILGLRA 318
            S            A  + +P+K   DR +D+  T +      D E+  D  G I+  + 
Sbjct: 251 ESQSALWACAAAVAAARLQRPVKLRADRDDDMMVTGKRHCFAYDYEIGYDDHGRIVAAKI 310

Query: 319 NVIGDVGAYSIYPWTAGLE-PV--QVISFMPGPYRVPVYHGKVRAVATSKSPTGPYRGVG 375
            +I   G      ++A L  PV  + +      Y +     +     T+      +RG G
Sbjct: 311 EMISRAG------FSADLSGPVATRAVCHFDNAYYLSDVDIRAMCGKTNTQSNTAFRGFG 364

Query: 376 RPASTFVMERLVDMAAHKLGIDAKEMRLRNLVKPEEFPYKTAPGIVWDRSGFIESLQDGC 435
            P     +E ++D  A  LG D  E+R  N   P +     A  +    + + + ++D  
Sbjct: 365 GPQGALAIEYIIDDIARHLGRDPLEIRRNNFYGPSDEEGPQARNV----THYGQKVEDNI 420

Query: 436 AALGYDEL-RKKQLEERAQGRWVGIGISTYAE--LSGIGSRISASPGMP-INTGTEIATI 491
                D+L R  + +ER Q        ST  +  L+    +   S  +P +N    +  +
Sbjct: 421 IPALVDQLERSSRYQERRQAVAAFNAGSTVLKKGLALTPVKFGISFNVPHLNQAGALVHV 480

Query: 492 KIDPSGSITAFFGIASHGQGLETTLAQVVADELGAKFEDITVVHGDTSVVSHSTGTYASR 551
             D  GS+    G    GQGL T +AQVVA  LG   E +     DTS V++++ T AS 
Sbjct: 481 YTD--GSVLVNHGGTEMGQGLNTKVAQVVAHTLGVPLERVRCSATDTSKVANTSATAAST 538

Query: 552 SAVLAGGAGTLAAQAMKEKLFRIAAHMLNSHVAHLSIEEGVITAADSGNTVSIRDIADTV 611
            + L G A   AA  ++ +L ++AA +L      +   +G + A     +++  ++    
Sbjct: 539 GSDLNGKAAQDAALQVRTRLAQVAATLLGVEPTAVRFADGRVMAG--AQSMAFAELVMKA 596

Query: 612 YSQMGRLPKEAIEV-----LEETRSYDPVWGTTSSSTHLAVVEIDPETYMVHVKNYVVAE 666
           Y Q  +L  +          +  R +   +   + +  ++ V ID  T    +    +  
Sbjct: 597 YLQRVQLWSDGFYSTPKVHWDAKRMHGHPFFYFAYAAAVSEVVIDTLTGEWKLLQADLLY 656

Query: 667 DCGKIINPLIVAGQSHGAVAQGIGAALFEEIVYDERGQFLTASLVDYIIPTAPEIP 722
           D G+ +NP +  GQ  G   QG+G    EE+ +++ G+ +T +   Y IP   + P
Sbjct: 657 DAGQSLNPALDIGQVEGGFIQGMGWLTTEELWWNKDGKLMTHAPSTYKIPAISDCP 712


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,562,459
Number of extensions: 115254
Number of successful extensions: 406
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 397
Number of HSP's successfully gapped: 3
Length of query: 794
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 701
Effective length of database: 1,179,515
Effective search space: 826840015
Effective search space used: 826840015
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)